HHsearch alignment for GI: 254780877 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.16 E-value=3.1e-09 Score=94.02 Aligned_cols=175 Identities=22% Similarity=0.401 Sum_probs=112.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCCCCCH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776--5300224477403453201
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEYMEKHSVSR 645 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey~e~~~vs~ 645 (853)
T Consensus 16 ~di~g~~~~~~~L~~~i~~-------~~~p--hlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~ 86 (318)
T PRK00440 16 DEVVGQEEIVERLKSFVKE-------KNMP--HLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRN 86 (318)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 9941969999999999987-------9986--698889599889999999999976986434768951645667178999
Q ss_pred HHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf 30477112035667742113221564102202144149899999999840457887999778303315595485126876
Q gi|254780877|r 646 LIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL 725 (853)
Q Consensus 646 LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~ 725 (853)
T Consensus 87 ~i~~---~~~-------~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~-----------~~~~~fil~~n~~~ki- 144 (318)
T PRK00440 87 KIKE---FAR-------TAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQTTRFILSCNYSSKI- 144 (318)
T ss_pred HHHH---HHH-------HCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEECCCCCCC-
T ss_conf 9999---997-------26778997389998685532255678887643105-----------6662588634883337-
Q ss_pred HCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 40326799999999986288577266681586288998999999999999999999857989999889999999708
Q gi|254780877|r 726 IEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 726 ~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 802 (853)
T Consensus 145 -------------------i~~i~SRc-~~i~f~~~~~~~i~~~L~~I-------~~~E~--i~~~~~~l~~i~~~s 192 (318)
T PRK00440 145 -------------------IDPIQSRC-AVFRFSPLPKEAVIERLRYI-------AKNEG--LEITDDALEAIYYVS 192 (318)
T ss_pred -------------------CCCHHHHH-EEEECCCCCHHHHHHHHHHH-------HHHCC--CCCCHHHHHHHHHHC
T ss_conf -------------------61556551-01115789999999999999-------99859--998999999999864