HHsearch alignment for GI: 254780877 and conserved domain: PRK00440

>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.16  E-value=3.1e-09  Score=94.02  Aligned_cols=175  Identities=22%  Similarity=0.401  Sum_probs=112.9

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCCCCCH
Q ss_conf             67459489999999999874101236566512898726786168899999998723776--5300224477403453201
Q gi|254780877|r  568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEYMEKHSVSR  645 (853)
Q Consensus       568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey~e~~~vs~  645 (853)
T Consensus        16 ~di~g~~~~~~~L~~~i~~-------~~~p--hlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~   86 (318)
T PRK00440         16 DEVVGQEEIVERLKSFVKE-------KNMP--HLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRN   86 (318)
T ss_pred             HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf             9941969999999999987-------9986--698889599889999999999976986434768951645667178999


Q ss_pred             HHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHH
Q ss_conf             30477112035667742113221564102202144149899999999840457887999778303315595485126876
Q gi|254780877|r  646 LIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYL  725 (853)
Q Consensus       646 LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~  725 (853)
T Consensus        87 ~i~~---~~~-------~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~-----------~~~~~fil~~n~~~ki-  144 (318)
T PRK00440         87 KIKE---FAR-------TAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQTTRFILSCNYSSKI-  144 (318)
T ss_pred             HHHH---HHH-------HCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEECCCCCCC-
T ss_conf             9999---997-------26778997389998685532255678887643105-----------6662588634883337-


Q ss_pred             HCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf             40326799999999986288577266681586288998999999999999999999857989999889999999708
Q gi|254780877|r  726 IEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG  802 (853)
Q Consensus       726 ~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~  802 (853)
T Consensus       145 -------------------i~~i~SRc-~~i~f~~~~~~~i~~~L~~I-------~~~E~--i~~~~~~l~~i~~~s  192 (318)
T PRK00440        145 -------------------IDPIQSRC-AVFRFSPLPKEAVIERLRYI-------AKNEG--LEITDDALEAIYYVS  192 (318)
T ss_pred             -------------------CCCHHHHH-EEEECCCCCHHHHHHHHHHH-------HHHCC--CCCCHHHHHHHHHHC
T ss_conf             -------------------61556551-01115789999999999999-------99859--998999999999864