HHsearch alignment for GI: 254780877 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=99.23 E-value=1e-10 Score=106.15 Aligned_cols=181 Identities=18% Similarity=0.307 Sum_probs=120.7
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHC-----CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHH
Q ss_conf 699872985333335789999999633-----677786689528874077799999998734899844457437887313
Q gi|254780877|r 169 TEEARNGKLDPVIGRDDEMRRAIQVLS-----RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMG 243 (853)
Q Consensus 169 Te~Ar~GkLDPVIGRe~EI~~~~~iL~-----r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~ 243 (853)
T Consensus 5 veKYRPk~~~divg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~----------g~~viElNAS 74 (403)
T PRK04195 5 VEKYRPKSLSDVVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNAS 74 (403)
T ss_pred CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEECCC
T ss_conf 402189989998588999999999999987399657469988939987999999999984----------9985997710
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 54217454202454589999998607-----9976999636277302666554335888876531246604899744899
Q gi|254780877|r 244 ALIAGAKFRGEFEERLKSLLCEIRSE-----DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDE 318 (853)
Q Consensus 244 ~l~ag~~~rg~~e~r~~~i~~~~~~~-----~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~E 318 (853)
T Consensus 75 ----D~R~~~----~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~----s~~PiIli~N-d~ 141 (403)
T PRK04195 75 ----DQRTKD----VIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKK----AKNPIILTAN-DP 141 (403)
T ss_pred ----CCCCHH----HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC----CCCEEEEEEC-CC
T ss_conf ----114789----9999999876068877887349996343445724447999999999854----8870899826-84
Q ss_pred HHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9997300111320231111157776789999999789865414961015899999863332
Q gi|254780877|r 319 YRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNR 379 (853)
Q Consensus 319 yrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~r 379 (853)
T Consensus 142 ~~~~~---~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~----Egi~i~~~aL~~Ia~~s~G 195 (403)
T PRK04195 142 YDPSL---RPLRNACLMIEFKRLSKRSIVPVLKRICRK----EGIECEEEALREIAERSGG 195 (403)
T ss_pred CCCCH---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCC
T ss_conf 55671---779976612217994999999999999997----6999999999999998797