HHsearch alignment for GI: 254780877 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=99.08 E-value=1.5e-09 Score=96.55 Aligned_cols=176 Identities=22% Similarity=0.411 Sum_probs=117.3
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
T Consensus 14 ~divg~~~~v~~l~~Wl~~w~~g-~~~~k---~lLL~GPpGvGKTT~a~~lAk~~g---~~viElNASD~R~~~~I~~~i 86 (403)
T PRK04195 14 SDVVGNEKAKKQLREWIESWLKG-KPPKK---ALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQRTKDVIERVA 86 (403)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCC-CCCCC---EEEEECCCCCCHHHHHHHHHHHHC---CCEEEECCCCCCCHHHHHHHH
T ss_conf 99858899999999999998739-96574---699889399879999999999849---985997710114789999999
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 47711203566774211322156410220214414989----99999998404578879997783033155954851268
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
T Consensus 87 ~~~~~------~~sl~----~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s-------------~~PiIli~Nd--- 140 (403)
T PRK04195 87 GEAST------SGSLF----GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA-------------KNPIILTAND--- 140 (403)
T ss_pred HHHHH------CCCCC----CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC-------------CCEEEEEECC---
T ss_conf 98760------68877----8873499963434457244479999999998548-------------8708998268---
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 7640326799999999986288577266681586288998999999999999999999857989999889999999708
Q gi|254780877|r 724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRG 802 (853)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 802 (853)
T Consensus 141 -----~~---~--------~~~~~lrs~c-~~i~F~~~~~~~I~~~L~~I-------~~~Egi--~i~~~aL~~Ia~~s 193 (403)
T PRK04195 141 -----PY---D--------PSLRPLRNAC-LMIEFKRLSKRSIVPVLKRI-------CRKEGI--ECEEEALREIAERS 193 (403)
T ss_pred -----CC---C--------CCHHHHHHHH-HHCCCCCCCHHHHHHHHHHH-------HHHCCC--CCCHHHHHHHHHHC
T ss_conf -----45---5--------6717799766-12217994999999999999-------997699--99999999999987