HHsearch alignment for GI: 254780877 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=99.37 E-value=5.2e-11 Score=108.42 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=162.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
T Consensus 186 ~elIG~S~~m~~l~~~i~~v----A~sd~pV---LI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLF 258 (510)
T PRK05022 186 GEMIGQSPAMQQLKKEIEVV----AASDLNV---LITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELF 258 (510)
T ss_pred CCEEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHC
T ss_conf 97520899999999999999----6899988---9889898139999999996688789985788899998567899865
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEEC---CCCCEEECCCCEEEEC
Q ss_conf 47711203566774211322156-------4102202144149899999999840457887---9997783033155954
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD---SQGRTVDFRNTLIIMT 717 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd---~~G~~v~f~n~iii~T 717 (853)
T Consensus 259 Gh~k--------GaFtGA~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvR---IIAA 327 (510)
T PRK05022 259 GHVK--------GAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVR---VIAA 327 (510)
T ss_pred CCCC--------CCCCCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEE---EEEE
T ss_conf 9777--------8868865567881017789879875745499999999999984795885589946666689---9960
Q ss_pred CCHHHHHHHCCHHHHHHHHHHH-HHHHCCHHHHCCCCCE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf 8512687640326799999999-9862885772666815-86288998--999999999999999999857989999889
Q gi|254780877|r 718 SNLGAEYLIEDGDSVHDKVMGI-VRSAFKPEFLNRLDEI-ILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQ 793 (853)
Q Consensus 718 sN~G~~~~~~~~~~~~~~~~~~-l~~~f~peflnRid~i-v~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~ 793 (853)
T Consensus 328 Tnr--------------dL~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~--~~ls~e 391 (510)
T PRK05022 328 TNR--------------DLREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSS--LRLSPD 391 (510)
T ss_pred CCC--------------CHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC--CCCCHH
T ss_conf 783--------------5999988396389999876204034808655554099999999999999829898--988899
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999997089822062157999998733
Q gi|254780877|r 794 VIDWLSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 794 ~~~~l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
T Consensus 392 Al~~L~~--Y~WPGNVRELenvIeRA~l 417 (510)
T PRK05022 392 AQAALLQ--YDWPGNVRELEHVISRAAL 417 (510)
T ss_pred HHHHHHC--CCCCCHHHHHHHHHHHHHH
T ss_conf 9999970--9999789999999999999