HHsearch alignment for GI: 254780877 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.26 E-value=2.3e-10 Score=103.12 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=147.4
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCH--H----------HCC
Q ss_conf 56998729853333357899999996336777866-8952887407779999999873489984--4----------457
Q gi|254780877|r 168 LTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNP-VLIGDPGVGKTAIIEGLASRIINGDIPE--S----------LKG 234 (853)
Q Consensus 168 LTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~--~----------l~~ 234 (853)
T Consensus 6 LyrkyRP~~f~dvvgQ~~v~~~L~n~i~~~~i~hayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g 85 (541)
T PRK05563 6 LYREWRPRTFEDVVGQEHITTTLKNQIINNRIAHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEG 85 (541)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 88764899776624849999999999984993204530387995899999999999579998889857514889998568
Q ss_pred C--EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC--CC
Q ss_conf 4--37887313542174542024545899999986079---97699963627730266655433588887653124--66
Q gi|254780877|r 235 K--RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSED---GEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR--GE 307 (853)
Q Consensus 235 ~--~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~---~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar--G~ 307 (853)
T Consensus 86 ~~~Dv~Eida------as~~gv--d~iR~~~~~~~~~p~~~~~Kv~IiDEvhml--------s~~a~nallKtlEePp~~ 149 (541)
T PRK05563 86 LLMDVIEIDA------ASNNGV--DDIREIIENVKYPPQEGKYKVYIMDEVHML--------SQGAVNAFLKTLEEPPSN 149 (541)
T ss_pred CCCCEEEECC------CCCCCH--HHHHHHHHHCEECCCCCCEEEEEEECCCCC--------CHHHHHHHHHHHHCCCCC
T ss_conf 9887366244------444788--999999976104876787059999772338--------999999999998548777
Q ss_pred EEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 04899744899999730011132023111115777678999999978986541496101589999986333202457674
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLP 387 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lP 387 (853)
T Consensus 150 ~~Filatte--~~ki~---~tI~SRcq~f~f~~i~~~~i~~~L~~I~~~----E~i~~~~~al~lIa~~s~GsmRD---- 216 (541)
T PRK05563 150 VIFILATTD--PQKLP---ITILSRCQRFDFKRIKVKDIFKRLRKIVEE----QGIFADDKSLNLIARMSDGAMRD---- 216 (541)
T ss_pred CEEEEECCC--CCCCC---HHHHHHEEEEEEEECCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCHHH----
T ss_conf 569997698--44274---556742135775438999999999999998----49998789999999745997788----
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7789999999998
Q gi|254780877|r 388 DKAIDLMDEASAR 400 (853)
Q Consensus 388 DKAIDllDeA~A~ 400 (853)
T Consensus 217 --AlslLdQ~is~ 227 (541)
T PRK05563 217 --ALSILDQAISM 227 (541)
T ss_pred --HHHHHHHHHHH
T ss_conf --99999999983