HHsearch alignment for GI: 254780877 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=98.60 E-value=0.0001 Score=57.27 Aligned_cols=157 Identities=20% Similarity=0.396 Sum_probs=108.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI 647 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li 647 (853)
T Consensus 4 ~~iiGq~~i~~~L~~~i~~~rl-------~-HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~------ 69 (313)
T PRK05564 4 RTIIGHENIKNRIDNSIIKGKF-------S-HASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN------ 69 (313)
T ss_pred HHCCCHHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC------
T ss_conf 2326829999999999987998-------7-5043279998509999999999982899778898658863322------
Q ss_pred CCCCHHCCCCCCCCCCHHHHCCCC----CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf 477112035667742113221564----1022021441498999999998404578879997783033155954851268
Q gi|254780877|r 648 GSPPGYVGYEEGGALTEAVRRHPY----QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE 723 (853)
Q Consensus 648 GappGYvG~~~gg~Lte~vr~~P~----sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~ 723 (853)
T Consensus 70 ---~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP-----------P~~t~fIL~t~~~~- 134 (313)
T PRK05564 70 ---KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENLE- 134 (313)
T ss_pred ---CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC-----------CCCEEEEEEECCHH-
T ss_conf ---569998999999999840862589569998077775899999984550368-----------99858998649835-
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 76403267999999999862885772666815862889989999999999
Q gi|254780877|r 724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQ 773 (853)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~ 773 (853)
T Consensus 135 -------------------~lLpTI~SRC-Q~~~f~~l~~~~i~~~L~~~ 164 (313)
T PRK05564 135 -------------------QILDTIKSRC-QIYKLNRLSKEDIEKFISYK 164 (313)
T ss_pred -------------------HCCCHHHCCC-EEEECCCCCHHHHHHHHHHH
T ss_conf -------------------4757787065-35668998999999999986