HHsearch alignment for GI: 254780877 and conserved domain: PRK05564

>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=98.60  E-value=0.0001  Score=57.27  Aligned_cols=157  Identities=20%  Similarity=0.396  Sum_probs=108.1

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r  568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI  647 (853)
Q Consensus       568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li  647 (853)
T Consensus         4 ~~iiGq~~i~~~L~~~i~~~rl-------~-HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~------   69 (313)
T PRK05564          4 RTIIGHENIKNRIDNSIIKGKF-------S-HASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPIN------   69 (313)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC------
T ss_conf             2326829999999999987998-------7-5043279998509999999999982899778898658863322------


Q ss_pred             CCCCHHCCCCCCCCCCHHHHCCCC----CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHH
Q ss_conf             477112035667742113221564----1022021441498999999998404578879997783033155954851268
Q gi|254780877|r  648 GSPPGYVGYEEGGALTEAVRRHPY----QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAE  723 (853)
Q Consensus       648 GappGYvG~~~gg~Lte~vr~~P~----sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~  723 (853)
T Consensus        70 ---~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP-----------P~~t~fIL~t~~~~-  134 (313)
T PRK05564         70 ---KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENLE-  134 (313)
T ss_pred             ---CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC-----------CCCEEEEEEECCHH-
T ss_conf             ---569998999999999840862589569998077775899999984550368-----------99858998649835-


Q ss_pred             HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf             76403267999999999862885772666815862889989999999999
Q gi|254780877|r  724 YLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQ  773 (853)
Q Consensus       724 ~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~  773 (853)
T Consensus       135 -------------------~lLpTI~SRC-Q~~~f~~l~~~~i~~~L~~~  164 (313)
T PRK05564        135 -------------------QILDTIKSRC-QIYKLNRLSKEDIEKFISYK  164 (313)
T ss_pred             -------------------HCCCHHHCCC-EEEECCCCCHHHHHHHHHHH
T ss_conf             -------------------4757787065-35668998999999999986