HHsearch alignment for GI: 254780877 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.65 E-value=4.8e-06 Score=68.11 Aligned_cols=157 Identities=18% Similarity=0.402 Sum_probs=81.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
T Consensus 47 ~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~---------~~~~---------~~l--~~~d~l~IDDi 106 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---------PELL---------DNL--EQYELVCIDDL 106 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---------HHHH---------HHH--HHCCEEEEECH
T ss_conf 389988999988999999999998079967997899987544---------9998---------624--22798989364
Q ss_pred HHC--CHH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC
Q ss_conf 414--989----99999998404578879997783033155954851268764032679999999998628857726668
Q gi|254780877|r 680 EKA--HSD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD 753 (853)
Q Consensus 680 EKa--h~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid 753 (853)
T Consensus 107 ~~i~g~~~~e~~lF~l~N~~~~~~--------------~~llits~~~P~~l~----------------~~l~DL~SRl~ 156 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLRDSG--------------RRLLLAASKSPRELP----------------VKLPDLKSRLT 156 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHHC----------------CCHHHHHHHHH
T ss_conf 554688599999999999999839--------------959995787955523----------------00167999995
Q ss_pred --CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf --15862889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 754 --EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 754 --~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
T Consensus 157 ~~~~~~i~~l~d~~~~~iL~~-------~a~~rgi--~l~~~v~~yl~~r~-~R~~--~~L~~~l~~ 211 (234)
T PRK05642 157 LALVFQMRGLSDEDKLRALQL-------RASRRGL--HLTDEVGHFILTRG-TRSM--SALFDLLER 211 (234)
T ss_pred CCCEEEECCCCHHHHHHHHHH-------HHHHCCC--CCCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf 781275148998999999999-------9775468--99989999999973-5889--999999999