HHsearch alignment for GI: 254780877 and conserved domain: PRK05642

>PRK05642 DNA replication initiation factor; Validated.
Probab=98.65  E-value=4.8e-06  Score=68.11  Aligned_cols=157  Identities=18%  Similarity=0.402  Sum_probs=81.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf             89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r  600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI  679 (853)
Q Consensus       600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi  679 (853)
T Consensus        47 ~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~---------~~~~---------~~l--~~~d~l~IDDi  106 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---------PELL---------DNL--EQYELVCIDDL  106 (234)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---------HHHH---------HHH--HHCCEEEEECH
T ss_conf             389988999988999999999998079967997899987544---------9998---------624--22798989364


Q ss_pred             HHC--CHH----HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC
Q ss_conf             414--989----99999998404578879997783033155954851268764032679999999998628857726668
Q gi|254780877|r  680 EKA--HSD----VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD  753 (853)
Q Consensus       680 EKa--h~~----v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid  753 (853)
T Consensus       107 ~~i~g~~~~e~~lF~l~N~~~~~~--------------~~llits~~~P~~l~----------------~~l~DL~SRl~  156 (234)
T PRK05642        107 DVIAGKADWEEALFHLFNRLRDSG--------------RRLLLAASKSPRELP----------------VKLPDLKSRLT  156 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHHC----------------CCHHHHHHHHH
T ss_conf             554688599999999999999839--------------959995787955523----------------00167999995


Q ss_pred             --CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             --15862889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r  754 --EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR  818 (853)
Q Consensus       754 --~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~  818 (853)
T Consensus       157 ~~~~~~i~~l~d~~~~~iL~~-------~a~~rgi--~l~~~v~~yl~~r~-~R~~--~~L~~~l~~  211 (234)
T PRK05642        157 LALVFQMRGLSDEDKLRALQL-------RASRRGL--HLTDEVGHFILTRG-TRSM--SALFDLLER  211 (234)
T ss_pred             CCCEEEECCCCHHHHHHHHHH-------HHHHCCC--CCCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf             781275148998999999999-------9775468--99989999999973-5889--999999999