HHsearch alignment for GI: 254780877 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.53 E-value=1.2e-05 Score=64.89 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHCCCC---CCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHH
Q ss_conf 3335789999999633677---7866-89528874077799999998734899844457437887313542174542024
Q gi|254780877|r 180 VIGRDDEMRRAIQVLSRRT---KNNP-VLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF 255 (853)
Q Consensus 180 VIGRe~EI~~~~~iL~r~~---k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~ 255 (853)
T Consensus 22 i~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~-------~~~~~yl~~~~~~--------- 85 (234)
T PRK05642 22 YPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELL--------- 85 (234)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEEHHHHH---------
T ss_conf 718759999999998760678778838998899998899999999999807-------9967997899987---------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE-CHHHHHHHHHCCHHHHHCCC
Q ss_conf 54589999998607997699963627730266655433588887653124660489974-48999997300111320231
Q gi|254780877|r 256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT-TLDEYRKYIEKDPALARRFQ 334 (853)
Q Consensus 256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT-T~~Eyrk~iEkD~Al~RRFq 334 (853)
T Consensus 86 -~~~~~~~~~l~~~d---~l~IDDi~~i~g~~~~e~~--lF~l~N~~~~~~~~llits~~~P~~l~-~~l~--DL~SRl~ 156 (234)
T PRK05642 86 -DRGPELLDNLEQYE---LVCIDDLDVIAGKADWEEA--LFHLFNRLRDSGRRLLLAASKSPRELP-VKLP--DLKSRLT 156 (234)
T ss_pred -HHHHHHHHHHHHCC---EEEEECHHHHCCCHHHHHH--HHHHHHHHHHCCCEEEEECCCCHHHHC-CCHH--HHHHHHH
T ss_conf -54499986242279---8989364554688599999--999999999839959995787955523-0016--7999995
Q ss_pred ---EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ---111157776789999999789865414961015899999863332024576747789999999
Q gi|254780877|r 335 ---SLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEA 397 (853)
Q Consensus 335 ---~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA 397 (853)
T Consensus 157 ~~~~~~i~~l~d~~~~~iL~~~a----~~rgi~l~~~v~~yl~~r~~R~~~~---L~~~l~~Ld~~ 215 (234)
T PRK05642 157 LALVFQMRGLSDEDKLRALQLRA----SRRGLHLTDEVGHFILTRGTRSMSA---LFDLLERLDQA 215 (234)
T ss_pred CCCEEEECCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHH
T ss_conf 78127514899899999999997----7546899989999999973588999---99999999999