HHsearch alignment for GI: 254780877 and conserved domain: PRK05642

>PRK05642 DNA replication initiation factor; Validated.
Probab=98.53  E-value=1.2e-05  Score=64.89  Aligned_cols=186  Identities=17%  Similarity=0.233  Sum_probs=117.5

Q ss_pred             CCCHHHHHHHHHHHHCCCC---CCCE-EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHH
Q ss_conf             3335789999999633677---7866-89528874077799999998734899844457437887313542174542024
Q gi|254780877|r  180 VIGRDDEMRRAIQVLSRRT---KNNP-VLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEF  255 (853)
Q Consensus       180 VIGRe~EI~~~~~iL~r~~---k~n~-~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~  255 (853)
T Consensus        22 i~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~-------~~~~~yl~~~~~~---------   85 (234)
T PRK05642         22 YPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELL---------   85 (234)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEEHHHHH---------
T ss_conf             718759999999998760678778838998899998899999999999807-------9967997899987---------


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE-CHHHHHHHHHCCHHHHHCCC
Q ss_conf             54589999998607997699963627730266655433588887653124660489974-48999997300111320231
Q gi|254780877|r  256 EERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGAT-TLDEYRKYIEKDPALARRFQ  334 (853)
Q Consensus       256 e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaT-T~~Eyrk~iEkD~Al~RRFq  334 (853)
T Consensus        86 -~~~~~~~~~l~~~d---~l~IDDi~~i~g~~~~e~~--lF~l~N~~~~~~~~llits~~~P~~l~-~~l~--DL~SRl~  156 (234)
T PRK05642         86 -DRGPELLDNLEQYE---LVCIDDLDVIAGKADWEEA--LFHLFNRLRDSGRRLLLAASKSPRELP-VKLP--DLKSRLT  156 (234)
T ss_pred             -HHHHHHHHHHHHCC---EEEEECHHHHCCCHHHHHH--HHHHHHHHHHCCCEEEEECCCCHHHHC-CCHH--HHHHHHH
T ss_conf             -54499986242279---8989364554688599999--999999999839959995787955523-0016--7999995


Q ss_pred             ---EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             ---111157776789999999789865414961015899999863332024576747789999999
Q gi|254780877|r  335 ---SLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEA  397 (853)
Q Consensus       335 ---~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA  397 (853)
T Consensus       157 ~~~~~~i~~l~d~~~~~iL~~~a----~~rgi~l~~~v~~yl~~r~~R~~~~---L~~~l~~Ld~~  215 (234)
T PRK05642        157 LALVFQMRGLSDEDKLRALQLRA----SRRGLHLTDEVGHFILTRGTRSMSA---LFDLLERLDQA  215 (234)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH---HHHHHHHHHHH
T ss_conf             78127514899899999999997----7546899989999999973588999---99999999999