HHsearch alignment for GI: 254780877 and conserved domain: PRK06526

>PRK06526 transposase; Provisional.
Probab=97.54  E-value=0.00027  Score=53.83  Aligned_cols=87  Identities=24%  Similarity=0.357  Sum_probs=57.4

Q ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999996336777866895288740777999999987348998444574378873135421745420245458999999
Q gi|254780877|r  186 EMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCE  265 (853)
Q Consensus       186 EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~  265 (853)
T Consensus        85 ~i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~-~a~~~g~~~~~~~~  156 (254)
T PRK06526         85 TIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLA-AAHHAGRLQDELVK  156 (254)
T ss_pred             HHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEEHHHHHHHHH-HHHHCCCHHHHHHH
T ss_conf             9999863717765887899899998689999999999998-------699679987799999999-98855809999998


Q ss_pred             HHHCCCCEEEEECCHHHH
Q ss_conf             860799769996362773
Q gi|254780877|r  266 IRSEDGEIILFIDELHVL  283 (853)
Q Consensus       266 ~~~~~~~~ilfide~h~~  283 (853)
T Consensus       157 l~~~d---LLIiDe~g~~  171 (254)
T PRK06526        157 LGRIP---LLIVDEVGYI  171 (254)
T ss_pred             HHCCC---EEEEECCCCC
T ss_conf             51368---7765021364