HHsearch alignment for GI: 254780877 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=97.54 E-value=0.00027 Score=53.83 Aligned_cols=87 Identities=24% Similarity=0.357 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999996336777866895288740777999999987348998444574378873135421745420245458999999
Q gi|254780877|r 186 EMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCE 265 (853)
Q Consensus 186 EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~ 265 (853)
T Consensus 85 ~i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~-~a~~~g~~~~~~~~ 156 (254)
T PRK06526 85 TIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLA-AAHHAGRLQDELVK 156 (254)
T ss_pred HHHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEEHHHHHHHHH-HHHHCCCHHHHHHH
T ss_conf 9999863717765887899899998689999999999998-------699679987799999999-98855809999998
Q ss_pred HHHCCCCEEEEECCHHHH
Q ss_conf 860799769996362773
Q gi|254780877|r 266 IRSEDGEIILFIDELHVL 283 (853)
Q Consensus 266 ~~~~~~~~ilfide~h~~ 283 (853)
T Consensus 157 l~~~d---LLIiDe~g~~ 171 (254)
T PRK06526 157 LGRIP---LLIVDEVGYI 171 (254)
T ss_pred HHCCC---EEEEECCCCC
T ss_conf 51368---7765021364