HHsearch alignment for GI: 254780877 and conserved domain: PRK06835
>PRK06835 DNA replication protein DnaC; Validated.
Probab=96.59 E-value=0.017 Score=39.14 Aligned_cols=118 Identities=24% Similarity=0.327 Sum_probs=68.8
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCC---CCCCCHHHHHHHHHHH
Q ss_conf 9999963367778668952887407779999999873489984445743788731354217---4542024545899999
Q gi|254780877|r 188 RRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAG---AKFRGEFEERLKSLLC 264 (853)
Q Consensus 188 ~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag---~~~rg~~e~r~~~i~~ 264 (853)
T Consensus 173 ~~fi~~F~~~~-~nLlf~G~~G~GKTfLa~~IA~ell~~-------g~sViy~ta~~L~~~l~~~~~~~--~~~~~~~~~ 242 (330)
T PRK06835 173 LNFIKNFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDR-------GKTVIYRTSDELIENLREIRFNN--DNDAPELED 242 (330)
T ss_pred HHHHHHCCCCC-CCEEEECCCCCCHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHHHHHHHCCC--CCCHHHHHH
T ss_conf 99987247888-866988999998899999999999987-------99499962999999999975457--644899999
Q ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCC-CCCHHHHHHHHHCCCCEEEEEEE--CHHHHHHH
Q ss_conf 986079976999636277302666554-33588887653124660489974--48999997
Q gi|254780877|r 265 EIRSEDGEIILFIDELHVLVGAGKTDG-AMDASNLLKPSLARGELHCIGAT--TLDEYRKY 322 (853)
Q Consensus 265 ~~~~~~~~~ilfide~h~~~gaG~~~g-~~Daan~LKP~LarG~l~~IgaT--T~~Eyrk~ 322 (853)
T Consensus 243 ~l~~~D---LLIIDDLG~E~---~t~~~~~~Lf~iIN~R~~~~k-~tIITTNl~~~eL~~~ 296 (330)
T PRK06835 243 LLINCD---LLIIDDLGTES---ITEFSKTELFNLINKRLLMNK-KMIISTNLSLEELLKT 296 (330)
T ss_pred HHHHCC---EEEEECCCCCC---CCHHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHH
T ss_conf 996189---89972103455---886899999999999986799-9799889998999998