HHsearch alignment for GI: 254780877 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=98.41 E-value=1.7e-05 Score=63.61 Aligned_cols=163 Identities=19% Similarity=0.324 Sum_probs=96.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHH
Q ss_conf 89872678616889999999872377653002244774034532013047711203566774211322156410220214
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEI 679 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEi 679 (853)
T Consensus 41 ~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~---------~~~~---------l~~l~--~~d~l~iDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF---------SPAV---------LENLE--QQDLVCLDDL 100 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHC---------CHHH---------HHHHH--HCCEEEEECH
T ss_conf 79998999998899999999999971898599973775640---------6999---------98765--4797999672
Q ss_pred HHC--CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC--CE
Q ss_conf 414--98999999998404578879997783033155954851268764032679999999998628857726668--15
Q gi|254780877|r 680 EKA--HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD--EI 755 (853)
Q Consensus 680 EKa--h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid--~i 755 (853)
T Consensus 101 ~~i~g~~~~e~~lF~l~N~---------l~~~~~~~ll~ss~~~p~~l~----------------~~l~DL~SRl~~~~~ 155 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNR---------IKESGKTLLLISANQSPHALQ----------------IKLPDLASRLTWGEI 155 (229)
T ss_pred HHHCCCHHHHHHHHHHHHH---------HHHCCCCEEEEECCCCHHHHC----------------CHHHHHHHHHHCCEE
T ss_conf 3424883899999999999---------997599179985798833221----------------002679999968836
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 8628899899999999999999999985798999988999999970898220621579999987
Q gi|254780877|r 756 ILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRY 819 (853)
Q Consensus 756 v~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~ 819 (853)
T Consensus 156 ~~i~~~dd~~~~~iL~~-------~a~~rgl~--l~~~v~~yl~~r-~~R~~--~~l~~~l~~L 207 (229)
T PRK06893 156 YQLNDLTDEQKIEVLQR-------NAYQRGIE--LSDETANFLLKR-LDRDM--HTLFDALDLL 207 (229)
T ss_pred EEECCCCHHHHHHHHHH-------HHHHCCCC--CCHHHHHHHHHH-HCCCH--HHHHHHHHHH
T ss_conf 99667775799999999-------99964999--998999999998-34789--9999999999