HHsearch alignment for GI: 254780877 and conserved domain: PRK07399
>PRK07399 DNA polymerase III subunit delta'; Validated.
Probab=99.02 E-value=8.3e-09 Score=90.54 Aligned_cols=166 Identities=23% Similarity=0.415 Sum_probs=96.4
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHCCCCC
Q ss_conf 767459489999999999874101236566512898726786168899999998723776530----0224477403453
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSM----IRIDMSEYMEKHS 642 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~l----ir~dMsey~e~~~ 642 (853)
T Consensus 3 F~~iiGq~~~~~~L~~ai~~~rl-------~-hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri~~~nHPDl~~ 74 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIEQNRI-------A-PAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEE
T ss_conf 33125949999999999985996-------7-448778999832999999999998578999976655875189997788
Q ss_pred CC-------HHHC-----------CCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEE
Q ss_conf 20-------1304-----------7711203566774211322156----410220214414989999999984045788
Q gi|254780877|r 643 VS-------RLIG-----------SPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLT 700 (853)
Q Consensus 643 vs-------~LiG-----------appGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~lt 700 (853)
T Consensus 75 i~P~~~~~g~~~~~~~~~~~~~~~~~~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEEP--- 151 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKSPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP--- 151 (314)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC---
T ss_conf 60562003454557789876530268777879999999999731885688479998897871999999999861478---
Q ss_pred CCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHH
Q ss_conf 7999778303315595485126876403267999999999862885772666815862889989999999999
Q gi|254780877|r 701 DSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQ 773 (853)
Q Consensus 701 d~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~ 773 (853)
T Consensus 152 -~~-------~~fILit~~~~---------------------~lLpTI~SRC-Q~i~F~~l~~~~i~~~L~~~ 194 (314)
T PRK07399 152 -GN-------GTLILIAPSPE---------------------SLLPTIVSRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred -CC-------CEEEEEECCHH---------------------HCCHHHHCCC-EEEECCCCCHHHHHHHHHHC
T ss_conf -78-------56999979936---------------------4914664187-56338998999999999971