HHsearch alignment for GI: 254780877 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.60  E-value=7.7e-06  Score=66.43  Aligned_cols=157  Identities=19%  Similarity=0.307  Sum_probs=72.3

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf             98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r  601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE  680 (853)
Q Consensus       601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE  680 (853)
T Consensus        48 l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~---------~~~~---------l~~l--~~~dll~iDDi~  107 (235)
T PRK08084         48 IYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWF---------VPEV---------LEGM--EQLSLVCIDNIE  107 (235)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH---------HHHH---------HHHH--HHCCEEEEECHH
T ss_conf             9998999988899999999999707985799877986651---------7999---------9876--418989982745


Q ss_pred             HCC--H----HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-
Q ss_conf             149--8----999999998404578879997783033155954851268764032679999999998628857726668-
Q gi|254780877|r  681 KAH--S----DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD-  753 (853)
Q Consensus       681 Kah--~----~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid-  753 (853)
T Consensus       108 ~i~g~~~~ee~lF~l~N~~~~~g~-------------~~ll~ts~~~P~~l~----------------~~l~DL~SRl~~  158 (235)
T PRK08084        108 CIAGDELWEMAIFDLYNRILESGK-------------TRLLITGDRPPRQLN----------------LGLPDLASRLDW  158 (235)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHCC-------------CEEEEECCCCHHHCC----------------CCCHHHHHHHHC
T ss_conf             546997899999999999998489-------------669996798824302----------------312889999956


Q ss_pred             -CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             -15862889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r  754 -EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR  818 (853)
Q Consensus       754 -~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~  818 (853)
T Consensus       159 g~~~~i~~~dde~~~~iL~~-------~a~~rgl~--l~~~V~~yl~~~~-~R~~--~~L~~~l~~  212 (235)
T PRK08084        159 GQIYKLQPLSDEEKLQALQL-------RARLRGFE--LPEDVGRFLLKRL-DREM--RTLFMTLDQ  212 (235)
T ss_pred             CCEEEECCCCHHHHHHHHHH-------HHHHCCCC--CCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf             97278559998999999999-------99973999--9989999999861-5889--999999999