HHsearch alignment for GI: 254780877 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.60 E-value=7.7e-06 Score=66.43 Aligned_cols=157 Identities=19% Similarity=0.307 Sum_probs=72.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE 680 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE 680 (853)
T Consensus 48 l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~---------~~~~---------l~~l--~~~dll~iDDi~ 107 (235)
T PRK08084 48 IYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWF---------VPEV---------LEGM--EQLSLVCIDNIE 107 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH---------HHHH---------HHHH--HHCCEEEEECHH
T ss_conf 9998999988899999999999707985799877986651---------7999---------9876--418989982745
Q ss_pred HCC--H----HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-
Q ss_conf 149--8----999999998404578879997783033155954851268764032679999999998628857726668-
Q gi|254780877|r 681 KAH--S----DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD- 753 (853)
Q Consensus 681 Kah--~----~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid- 753 (853)
T Consensus 108 ~i~g~~~~ee~lF~l~N~~~~~g~-------------~~ll~ts~~~P~~l~----------------~~l~DL~SRl~~ 158 (235)
T PRK08084 108 CIAGDELWEMAIFDLYNRILESGK-------------TRLLITGDRPPRQLN----------------LGLPDLASRLDW 158 (235)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCC-------------CEEEEECCCCHHHCC----------------CCCHHHHHHHHC
T ss_conf 546997899999999999998489-------------669996798824302----------------312889999956
Q ss_pred -CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf -15862889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 754 -EIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 754 -~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
T Consensus 159 g~~~~i~~~dde~~~~iL~~-------~a~~rgl~--l~~~V~~yl~~~~-~R~~--~~L~~~l~~ 212 (235)
T PRK08084 159 GQIYKLQPLSDEEKLQALQL-------RARLRGFE--LPEDVGRFLLKRL-DREM--RTLFMTLDQ 212 (235)
T ss_pred CCEEEECCCCHHHHHHHHHH-------HHHHCCCC--CCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf 97278559998999999999-------99973999--9989999999861-5889--999999999