HHsearch alignment for GI: 254780877 and conserved domain: PRK08699
>PRK08699 DNA polymerase III subunit delta'; Validated.
Probab=97.89 E-value=6.7e-05 Score=58.78 Aligned_cols=141 Identities=17% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCH-----HHCCCE---------EEEEEH--HHHHCCCCCCCH-HHHH
Q ss_conf 7778668952887407779999999873489-984-----445743---------788731--354217454202-4545
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGD-IPE-----SLKGKR---------LMALDM--GALIAGAKFRGE-FEER 258 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~-vp~-----~l~~~~---------i~~ld~--~~l~ag~~~rg~-~e~r 258 (853)
T Consensus 19 rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~-~I~idq 97 (325)
T PRK08699 19 RRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLL-QIKIDA 97 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC-CCCHHH
T ss_conf 5011797579999789999999999982899988899898888899986599999688513445300166556-676999
Q ss_pred HHHHHHHHHHC---CCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCC--EEEEEEECHHHHHHHHHCCHHHHHCC
Q ss_conf 89999998607---99769996362773026665543358888765312466--04899744899999730011132023
Q gi|254780877|r 259 LKSLLCEIRSE---DGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGE--LHCIGATTLDEYRKYIEKDPALARRF 333 (853)
Q Consensus 259 ~~~i~~~~~~~---~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~--l~~IgaTT~~Eyrk~iEkD~Al~RRF 333 (853)
T Consensus 98 iR~l~~~~~~~~~~~~~kV~ii~~ae~mn--------~~aaNaLLK~LEEPp~~~~fiL~t~~~--~~l---lpTI~SRc 164 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN--------VQAANSLLKVLEEPPPQVVFLLVSHAA--DKV---LPTIKSRC 164 (325)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCHHHHC--------HHHHHHHHHHHCCCCCCEEEEEEECCH--HHC---CCHHHHCC
T ss_conf 99999997108656894699985777758--------999999999841788884899987984--646---23398645
Q ss_pred CEEECCCCCHHHHHHHHH
Q ss_conf 111115777678999999
Q gi|254780877|r 334 QSLLVGEPTVTDTISILR 351 (853)
Q Consensus 334 q~i~V~Eps~~~t~~iL~ 351 (853)
T Consensus 165 ~~~~~~~p~~~~~~~~L~ 182 (325)
T PRK08699 165 RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 421089959999999999