HHsearch alignment for GI: 254780877 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.67 E-value=2e-06 Score=71.16 Aligned_cols=195 Identities=17% Similarity=0.136 Sum_probs=82.3
Q ss_pred CCCCCCHHHHHHHHHH----CCCCHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH---H-HHHHHHHHHH-
Q ss_conf 9870259998766872----775178899-9759998999999998737788787775467610---7-8864435699-
Q gi|254780877|r 102 GDSFVTAEKFLLAMVM----ETGGIGESL-KKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDA---L-KKYCRDLTEE- 171 (853)
Q Consensus 102 g~~~I~~ehLLlAIl~----e~~s~a~iL-~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~---L-~ky~~DLTe~- 171 (853)
T Consensus 15 f~e~vGQ~~v~~~L~nal~~~rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~~EiD 94 (717)
T PRK08853 15 FKEVVGQSHVLTALENALAHNRLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDLLEID 94 (717)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEC
T ss_conf 65513859999999999970997405761088988898999999998678999999978887026767447877524540
Q ss_pred -HHCCCCCCCCCHHHHHHHHHHH---HCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCC------------
Q ss_conf -8729853333357899999996---336777866895288740777999999987348998444574------------
Q gi|254780877|r 172 -ARNGKLDPVIGRDDEMRRAIQV---LSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGK------------ 235 (853)
Q Consensus 172 -Ar~GkLDPVIGRe~EI~~~~~i---L~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~------------ 235 (853)
T Consensus 95 aAs~~~-------vdd~rel~~~~~y~p~~~~yKvyiiDEvHmls~~afnAlLKtlEE--PP~hv~FilaTT~~~kip~T 165 (717)
T PRK08853 95 AASRTK-------VEDTRELLDNVQYKPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--PPEYVKFLLATTDPQKLPVT 165 (717)
T ss_pred CCCCCC-------HHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--CCCCEEEEEECCCHHHCCHH
T ss_conf 565678-------899999998555488778547999830544389999999876037--87564899843873437388
Q ss_pred ---EEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCC-CCHHHHHHHHHCCCCEEEE
Q ss_conf ---378873135421745420245458999999860799769996362773026665543-3588887653124660489
Q gi|254780877|r 236 ---RLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGA-MDASNLLKPSLARGELHCI 311 (853)
Q Consensus 236 ---~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~-~Daan~LKP~LarG~l~~I 311 (853)
T Consensus 166 ilSRc~~f~l~~~~-----~~~i~~~l~~i~----~~E~--i~~~~~al~~i-a~~a~Gs~Rdalsl~dqaia~~~---- 229 (717)
T PRK08853 166 ILSRCLQFHLKPIS-----VDQIHQQLDFVL----DKEQ--VSAEARALGLI-AHAADGSMRDALSLTDQAIALGN---- 229 (717)
T ss_pred HHHHHHHCCCCCCC-----HHHHHHHHHHHH----HHCC--CCCCHHHHHHH-HHHCCCCHHHHHHHHHHHHHHCC----
T ss_conf 98765442326899-----999999999999----9759--87699999999-99768837788889999999658----
Q ss_pred EEECHHHHHH
Q ss_conf 9744899999
Q gi|254780877|r 312 GATTLDEYRK 321 (853)
Q Consensus 312 gaTT~~Eyrk 321 (853)
T Consensus 230 g~~~~~~v~~ 239 (717)
T PRK08853 230 GQVTTDIVSH 239 (717)
T ss_pred CCCCHHHHHH
T ss_conf 9716999999