HHsearch alignment for GI: 254780877 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=96.12 E-value=0.05 Score=35.42 Aligned_cols=123 Identities=21% Similarity=0.324 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHC----CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCC---CCCH
Q ss_conf 35789999999633----6777866895288740777999999987348998444574378873135421745---4202
Q gi|254780877|r 182 GRDDEMRRAIQVLS----RRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAK---FRGE 254 (853)
Q Consensus 182 GRe~EI~~~~~iL~----r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~---~rg~ 254 (853)
T Consensus 136 ~R~~a~~~a~~F~~~y~~~~~~kGlyl~G~~G~GKTyL~~aian~La~~g-------~~v~~v~~p~~~~~lK~s~~d~s 208 (306)
T PRK08939 136 DRLDALMAALDFLEAYKPGEKVKGLYLYGDFGVGKTYLLAAIANELAKKG-------VSSTLVHFPEFIRELKNAISDGS 208 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-------CEEEEEEHHHHHHHHHHHHCCCC
T ss_conf 89999999999999737698887788989999989999999999999869-------92999875999999999864898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHC---CCCEEEEEEE--CHHHHHHHH
Q ss_conf 45458999999860799769996362773026665543358888765312---4660489974--489999973
Q gi|254780877|r 255 FEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLA---RGELHCIGAT--TLDEYRKYI 323 (853)
Q Consensus 255 ~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~La---rG~l~~IgaT--T~~Eyrk~i 323 (853)
T Consensus 209 ~~----~~i~~~k~~~---vLiLDDi----GaE~~-t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l 270 (306)
T PRK08939 209 VK----EKIDAVKEAP---VLMLDDI----GAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 270 (306)
T ss_pred HH----HHHHHHHCCC---EEEEECC----CCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf 89----9999984499---8998444----65426-77789989999999999749997997799999999998