HHsearch alignment for GI: 254780877 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.07 E-value=1.2e-08 Score=89.29 Aligned_cols=199 Identities=25% Similarity=0.327 Sum_probs=137.9
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHHHC-------CCCCHHH---------
Q ss_conf 998729853333357899999996336-77786689528874077799999998734-------8998444---------
Q gi|254780877|r 170 EEARNGKLDPVIGRDDEMRRAIQVLSR-RTKNNPVLIGDPGVGKTAIIEGLASRIIN-------GDIPESL--------- 232 (853)
Q Consensus 170 e~Ar~GkLDPVIGRe~EI~~~~~iL~r-~~k~n~~lvGe~GvGKtaive~la~~i~~-------~~vp~~l--------- 232 (853)
T Consensus 15 ~k~rp~~f~~~~gq~~~~~~l~~~~~~~~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~c~~i 94 (600)
T PRK09111 15 RKYRPQTFDDLIGQEAMVRTLRNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEHCQAI 94 (600)
T ss_pred ECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 10179877663385999999999997298420476457898789999999999966988766689988989988658988
Q ss_pred -CC--CEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-
Q ss_conf -57--4378873135421745420245458999999860799---7699963627730266655433588887653124-
Q gi|254780877|r 233 -KG--KRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG---EIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR- 305 (853)
Q Consensus 233 -~~--~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~---~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar- 305 (853)
T Consensus 95 ~~~~~~d~~e~da------as~~~v--~~~r~~~~~~~~~p~~~~~kv~iidevhml--------s~~afnallktleep 158 (600)
T PRK09111 95 MEGRHVDVIEMDA------ASHTGV--DDIREIIESVRYRPVSARYKVYIIDEVHML--------STAAFNALLKTLEEP 158 (600)
T ss_pred HCCCCCCEEEEEC------CCCCCH--HHHHHHHHHHCCCCCCCCEEEEEEECCCCC--------CHHHHHHHHHHHHCC
T ss_conf 6689987588515------545788--899999986053887775469996001105--------799999999876259
Q ss_pred -CCEEEEEEECHHHHHHHHHCCH-HHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf -6604899744899999730011-13202311111577767899999997898654149610158999998633320245
Q gi|254780877|r 306 -GELHCIGATTLDEYRKYIEKDP-ALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITD 383 (853)
Q Consensus 306 -G~l~~IgaTT~~Eyrk~iEkD~-Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~ 383 (853)
T Consensus 159 p~~~~fi~att~--~~----k~p~ti~src~~f~~~~~~~~~~~~~l~~i~~~----e~~~~~~~al~~ia~~a~GS~RD 228 (600)
T PRK09111 159 PPHVKFIFATTE--IR----KVPVTVLSRCQRFDLRRIEAEVLAAHLARIAEK----EGVEVEPDALALIARAAEGSVRD 228 (600)
T ss_pred CCCEEEEEECCC--HH----HCCHHHHHHHHEECCCCCCHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHCCCCCCH
T ss_conf 865499996285--34----375899854412010579999999999999986----07686677999999974898421
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 76747789999999998
Q gi|254780877|r 384 RFLPDKAIDLMDEASAR 400 (853)
Q Consensus 384 r~lPDKAIDllDeA~A~ 400 (853)
T Consensus 229 ------aLSlLDQai~~ 239 (600)
T PRK09111 229 ------GLSLLDQAIAH 239 (600)
T ss_pred ------HHHHHHHHHHC
T ss_conf ------89999999972