HHsearch alignment for GI: 254780877 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=99.19 E-value=2.3e-10 Score=103.15 Aligned_cols=166 Identities=20% Similarity=0.390 Sum_probs=109.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHCCCCCCCH
Q ss_conf 76745948999999999987410123656651289872678616889999999872377653002-24477403453201
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIR-IDMSEYMEKHSVSR 645 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir-~dMsey~e~~~vs~ 645 (853)
T Consensus 22 ~~~liGq~~~~~~L~~a~~~gRl-------~-HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r 93 (352)
T PRK09112 22 NNRLFGHEEARAFLAQAYREGRL-------H-HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWR 93 (352)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 64627869999999999984996-------5-246535899808999999999998669986668655678887877899
Q ss_pred HH--CCCCHHCC----CCCC-C-----CCCHHHH-------CCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECC
Q ss_conf 30--47711203----5667-7-----4211322-------156----41022021441498999999998404578879
Q gi|254780877|r 646 LI--GSPPGYVG----YEEG-G-----ALTEAVR-------RHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDS 702 (853)
Q Consensus 646 Li--GappGYvG----~~~g-g-----~Lte~vr-------~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~ 702 (853)
T Consensus 94 ~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEP----- 168 (352)
T PRK09112 94 QIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP----- 168 (352)
T ss_pred HHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 997489999565534322021454335777999999998454886688069998187874699999999985348-----
Q ss_pred CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 9977830331559548512687640326799999999986288577266681586288998999999999
Q gi|254780877|r 703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRI 772 (853)
Q Consensus 703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~ 772 (853)
T Consensus 169 ------p~~~~fiLit~~~~--------------------~ll~TI~SRC-q~~~f~pL~~~di~~~L~~ 211 (352)
T PRK09112 169 ------PARALFILISHSSG--------------------RLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (352)
T ss_pred ------CCCEEEEEEECCHH--------------------HCHHHHHHHC-CCCCCCCCCHHHHHHHHHH
T ss_conf ------98748998869977--------------------7768999743-3214889398999999998