HHsearch alignment for GI: 254780877 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=97.51 E-value=0.00031 Score=53.42 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=54.2
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC---CCCCCCHHHHHHHHHH
Q ss_conf 9999996336777866895288740777999999987348998444574378873135421---7454202454589999
Q gi|254780877|r 187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA---GAKFRGEFEERLKSLL 263 (853)
Q Consensus 187 I~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~~e~r~~~i~ 263 (853)
T Consensus 89 i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~~a~~~~~~~~~l~r~- 160 (258)
T PRK09183 89 LQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG- 160 (258)
T ss_pred HHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHH-
T ss_conf 998825816655886799899998689999999999998-------799399978999999999998768599999987-
Q ss_pred HHHHHCCCCEEEEECCHHHH
Q ss_conf 99860799769996362773
Q gi|254780877|r 264 CEIRSEDGEIILFIDELHVL 283 (853)
Q Consensus 264 ~~~~~~~~~~ilfide~h~~ 283 (853)
T Consensus 161 --l~~---~dLLIiDdlG~~ 175 (258)
T PRK09183 161 --VMA---PRLLIIDEIGYL 175 (258)
T ss_pred --HCC---CCEEEEHHHHCC
T ss_conf --434---651443133154