HHsearch alignment for GI: 254780877 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=97.51  E-value=0.00031  Score=53.42  Aligned_cols=84  Identities=24%  Similarity=0.355  Sum_probs=54.2

Q ss_pred             HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC---CCCCCCHHHHHHHHHH
Q ss_conf             9999996336777866895288740777999999987348998444574378873135421---7454202454589999
Q gi|254780877|r  187 MRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA---GAKFRGEFEERLKSLL  263 (853)
Q Consensus       187 I~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~~e~r~~~i~  263 (853)
T Consensus        89 i~~La~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~~a~~~~~~~~~l~r~-  160 (258)
T PRK09183         89 LQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-  160 (258)
T ss_pred             HHHHHCCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHH-
T ss_conf             998825816655886799899998689999999999998-------799399978999999999998768599999987-


Q ss_pred             HHHHHCCCCEEEEECCHHHH
Q ss_conf             99860799769996362773
Q gi|254780877|r  264 CEIRSEDGEIILFIDELHVL  283 (853)
Q Consensus       264 ~~~~~~~~~~ilfide~h~~  283 (853)
T Consensus       161 --l~~---~dLLIiDdlG~~  175 (258)
T PRK09183        161 --VMA---PRLLIIDEIGYL  175 (258)
T ss_pred             --HCC---CCEEEEHHHHCC
T ss_conf             --434---651443133154