HHsearch alignment for GI: 254780877 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=99.52 E-value=4e-11 Score=109.35 Aligned_cols=220 Identities=19% Similarity=0.286 Sum_probs=161.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHC
Q ss_conf 74594899999999998741012365665128987267861688999999987237765300224477403453201304
Q gi|254780877|r 569 SVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIG 648 (853)
Q Consensus 569 ~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiG 648 (853)
T Consensus 140 ~liG~S~am~~v~~~i~~~----A~s~~p---VLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV----APSEAT---VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred CCEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 8666899999999999998----488994---899899981099999999965787789807987898984555898617
Q ss_pred CCCHHCCCCCCCCCCHHHHC-------CCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHH
Q ss_conf 77112035667742113221-------56410220214414989999999984045788799977830331559548512
Q gi|254780877|r 649 SPPGYVGYEEGGALTEAVRR-------HPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLG 721 (853)
Q Consensus 649 appGYvG~~~gg~Lte~vr~-------~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G 721 (853)
T Consensus 213 ~~~ga--------ftga~~~~~g~~~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~ 284 (441)
T PRK10365 213 HEKGA--------FTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 284 (441)
T ss_pred CCCCC--------CCCCCCCCCCCEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCC
T ss_conf 75568--------7896534689877889982550231529999999999877752100058873441363799837889
Q ss_pred HHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCC-EEECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHH
Q ss_conf 6876403267999999999-86288577266681-58628899--89999999999999999998579899998899999
Q gi|254780877|r 722 AEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDE-IILFEKLR--KEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDW 797 (853)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~-iv~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~ 797 (853)
T Consensus 285 --------------l~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~--~~~~~s~~a~~~ 348 (441)
T PRK10365 285 --------------LAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRK--AVKGFTPQAMDL 348 (441)
T ss_pred --------------HHHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHH
T ss_conf --------------9999881982589998860111378260006200999999999999998499--988889999999
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 997089822062157999998733
Q gi|254780877|r 798 LSCRGYDPSYGARPLKRVIQRYIQ 821 (853)
Q Consensus 798 l~~~~~~~~~GaR~l~r~i~~~i~ 821 (853)
T Consensus 349 L~~--y~WPGNvREL~n~iera~~ 370 (441)
T PRK10365 349 LIH--YDWPGNIRELENAVERAVV 370 (441)
T ss_pred HHC--CCCCCHHHHHHHHHHHHHH
T ss_conf 970--9999899999999999999