HHsearch alignment for GI: 254780877 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=98.11 E-value=0.00017 Score=55.46 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=113.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCC
Q ss_conf 29853333357899999996336--7778668952887407779999999873489984445743788731354217454
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKF 251 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~ 251 (853)
T Consensus 200 ~~~F~~iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH~~S~-------R~~~pFv~vnC~alp~~--- 269 (513)
T PRK10820 200 VSAFSQIVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHLASP-------RAKKPYLALNCASIPED--- 269 (513)
T ss_pred CCCHHHHEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCC-------CCCCCCEEEECCCCCHH---
T ss_conf 16877751089999999999999859899889989898249999999996688-------78998268889989967---
Q ss_pred CCHHHHHH--------HHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEE
Q ss_conf 20245458--------99999986079976999636277302666554335888876531246-------------6048
Q gi|254780877|r 252 RGEFEERL--------KSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARG-------------ELHC 310 (853)
Q Consensus 252 rg~~e~r~--------~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG-------------~l~~ 310 (853)
T Consensus 270 --l~eseLFG~a~~~~~G~fe---~A~gG-TLfLdEI~~l--------~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRi 335 (513)
T PRK10820 270 --AVESELFGHAPEGKKGFFE---QANGG-SVLLDEIGEM--------SPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRV 335 (513)
T ss_pred --HHHHHHCCCCCCCCCCCEE---ECCCC-EEEEECHHHC--------CHHHHHHHHHHHHCCEEEECCCCCEEEEEEEE
T ss_conf --8999863876668897557---85898-8999783659--------99999999999868979965998535677899
Q ss_pred EEEECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 9974489999973001---1132023111115777678999999978986541496101589999986333202-45767
Q gi|254780877|r 311 IGATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYI-TDRFL 386 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi-~~r~l 386 (853)
T Consensus 336 IaaT~~dL~-~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~f---------------l~~~~~~~g~~~~~l 399 (513)
T PRK10820 336 ICATQKNLV-ELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELF---------------VARFADEQGVPRPKL 399 (513)
T ss_pred EECCCHHHH-HHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHH---------------HHHHHHHCCCCCCCC
T ss_conf 962653099-9987298508899986167255888344655699999999---------------999999759998984
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 47789999999998754102221457887999997
Q gi|254780877|r 387 PDKAIDLMDEASARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 387 PDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
T Consensus 400 s~~a~---------~~L~~y~WPGNVREL~n~ier 425 (513)
T PRK10820 400 SADLS---------TVLTRYGWPGNVRQLKNAIYR 425 (513)
T ss_pred CHHHH---------HHHHHCCCCCHHHHHHHHHHH
T ss_conf 79999---------999708999799999999999