HHsearch alignment for GI: 254780877 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=100.00 E-value=0 Score=1803.87 Aligned_cols=723 Identities=39% Similarity=0.673 Sum_probs=672.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC---CCCCCCC
Q ss_conf 1799999999999999982899633899999986188766899999739998999999999997459547---8977770
Q gi|254780877|r 6 YSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSGGDIAQLKDYNQTVLSKIPKVT---GGGAQVY 82 (853)
Q Consensus 6 FS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~gvd~~~L~~~le~~L~k~~k~~---~~~~~~~ 82 (853)
T Consensus 2 ~s~~l~~~L~~A~~~A~~~~H~~v~~EHlLlaLl~~~~--~~~~L~~~~~d~~~l~~~l~~~i~~~~~~~~~~~~~~~~~ 79 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH--HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 89799999999999999829983229999999986941--8999998599999999999999972588778887756778
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCC----CCCC------
Q ss_conf 69899999999999999719870259998766872775178-899975999899999999873778----8787------
Q gi|254780877|r 83 LSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGR----VADS------ 151 (853)
Q Consensus 83 ~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~----~~~~------ 151 (853)
T Consensus 80 ~t~~~~rvl~~A~~~a~~~g~~~v~~~~lLlall~e~~~~a~~~L~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T PRK11034 80 PTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDPGSQPNS 159 (758)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 77789999999999999839983049999999971785589999997799889999999722433443334455567665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 77546761078864435699872985333335789999999633677786689528874077799999998734899844
Q gi|254780877|r 152 VNAEQGFDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPES 231 (853)
Q Consensus 152 ~~~e~~~~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~ 231 (853)
T Consensus 160 ~~~~~~~~~L~ky~~dLt~~Ar~gklDPviGR~~Ei~r~i~iL~Rr~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~ 239 (758)
T PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 33444235899985647999982899987384899999999997632589602169998699999999999973899765
Q ss_pred HCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCC-CCCCHHHHHHHHHCCCCEEE
Q ss_conf 45743788731354217454202454589999998607997699963627730266655-43358888765312466048
Q gi|254780877|r 232 LKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKTD-GAMDASNLLKPSLARGELHC 310 (853)
Q Consensus 232 l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~-g~~Daan~LKP~LarG~l~~ 310 (853)
T Consensus 240 L~~~~i~~Ldl~~LiAGtkyRGefEeRlk~vi~e~~~~-~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~ 318 (758)
T PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_pred HCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 58988998458778616864154999999999999857-98599980434422688767776467887457874697239
Q ss_pred EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r 311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA 390 (853)
Q Consensus 311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA 390 (853)
T Consensus 319 IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~lPDKA 398 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred EEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99437799875032147888428265318999899999999899987323695774389999999997650268896199
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987541022214578879999974456999850222356656899987689999999999998886566765
Q gi|254780877|r 391 IDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKIL 470 (853)
Q Consensus 391 IDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 470 (853)
T Consensus 399 IdllDea~a~~~l~~~~~-------------------------------------------------------------- 416 (758)
T PRK11034 399 IDVIDEAGARARLMPVSK-------------------------------------------------------------- 416 (758)
T ss_pred HHHHHHHHHHHHCCHHHH--------------------------------------------------------------
T ss_conf 999999988875134566--------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 59999999887488888864211156765432011068999999999751126772000168667899987661786677
Q gi|254780877|r 471 YVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDK 550 (853)
Q Consensus 471 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~k 550 (853)
T Consensus 417 --------------------------------------------------------~~~~v~~~di~~vv~~~t~ip~~~ 440 (758)
T PRK11034 417 --------------------------------------------------------RKKTVNVADIESVVARIARIPEKS 440 (758)
T ss_pred --------------------------------------------------------HCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf --------------------------------------------------------316589999999998750360767
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 51000000012355477674594899999999998741012365665128987267861688999999987237765300
Q gi|254780877|r 551 MLESDREKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMI 630 (853)
Q Consensus 551 l~~~E~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~li 630 (853)
T Consensus 441 ~~~~~~~~l~~le~~l~~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L---~~~li 517 (758)
T PRK11034 441 VSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELL 517 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---HHHHH
T ss_conf 767799999989999877874549999999999999863888999970589997899877799999999998---66772
Q ss_pred CCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECC
Q ss_conf 22447740345320130477112035667742113221564102202144149899999999840457887999778303
Q gi|254780877|r 631 RIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFR 710 (853)
Q Consensus 631 r~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~ 710 (853)
T Consensus 518 r~DMSEy~e~hsvsrLiGaPPGYVGy~eGG~Lte~Vr~~PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~ 597 (758)
T PRK11034 518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred CCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECE
T ss_conf 14266531201477744899866676777701287873987799733675639899998873237783017999988440
Q ss_pred CCEEEECCCHHHHHHHCCH-----HHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3155954851268764032-----67999999999862885772666815862889989999999999999999998579
Q gi|254780877|r 711 NTLIIMTSNLGAEYLIEDG-----DSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERN 785 (853)
Q Consensus 711 n~iii~TsN~G~~~~~~~~-----~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~ 785 (853)
T Consensus 598 NtiIImTSN~Ga~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred EEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 01999825617487864214755420359999999954798677236747863889999999999999999999999789
Q ss_pred CEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC--CEEEEEE
Q ss_conf 899998899999997089822062157999998733499999970868897889999989--9489897
Q gi|254780877|r 786 ISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDD--DNLNFRV 852 (853)
Q Consensus 786 i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~--~~~~~~~ 852 (853)
T Consensus 678 i~l~~~~~a~~~l~~~gyd~~~GARpl~R~I~~~i~~~La~~il~g~~~~g~~v~v~~~~~~~~l~f~~ 746 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGF 746 (758)
T ss_pred CEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEE
T ss_conf 859988999999998488945371128899999988999999972988898989999978998799996