HHsearch alignment for GI: 254780877 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=98.43 E-value=1.2e-05 Score=64.74 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=114.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC----
Q ss_conf 29853333357899999996336--777866895288740777999999987348998444574378873135421----
Q gi|254780877|r 174 NGKLDPVIGRDDEMRRAIQVLSR--RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA---- 247 (853)
Q Consensus 174 ~GkLDPVIGRe~EI~~~~~iL~r--~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---- 247 (853)
T Consensus 2 ~~~~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r-------~~~pfi~v~C~~l~~~~~e 74 (325)
T PRK11608 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLD 74 (325)
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC-------CCCCCEEEECCCCCHHHHH
T ss_conf 877899858999999999999999688999898898983799999999965886-------7999778877989977889
Q ss_pred ----CCCCCCHHHHH---HHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCC-------------CC
Q ss_conf ----74542024545---89999998607997699963627730266655433588887653124-------------66
Q gi|254780877|r 248 ----GAKFRGEFEER---LKSLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLAR-------------GE 307 (853)
Q Consensus 248 ----g~~~rg~~e~r---~~~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~Lar-------------G~ 307 (853)
T Consensus 75 ~~LFG~~-~g~~~~~~~~~~g~l---e~a~gG-TL~L~eI~~l--------~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~ 141 (325)
T PRK11608 75 SELFGHE-AGAFTGAQKRHPGRF---ERADGG-TLFLDELATA--------PMLVQEKLLRVIEYGELERVGGSQPLQVN 141 (325)
T ss_pred HHHCCCC-CCCCCCCCCCCCCHH---HCCCCC-EEEEECHHHC--------CHHHHHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 9872775-567677532468734---356898-6997374547--------99999999999864908857998766564
Q ss_pred EEEEEEECHHHHHHHHHCC---HHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0489974489999973001---1132023111115777678999999978986541496101589999986333202457
Q gi|254780877|r 308 LHCIGATTLDEYRKYIEKD---PALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDR 384 (853)
Q Consensus 308 l~~IgaTT~~Eyrk~iEkD---~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r 384 (853)
T Consensus 142 ~RiIa~t~~-~l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~f---------------l~~~~~~~~~~~ 205 (325)
T PRK11608 142 VRLVCATNA-DLPAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHF---------------AIQMCRELGLPL 205 (325)
T ss_pred EEEEECCCH-HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHH---------------HHHHHHHCCCCC
T ss_conf 688713322-0899998395679998565301115868454710199999999---------------999999829998
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf --67477899999999987541022214578879999974
Q gi|254780877|r 385 --FLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICL 422 (853)
Q Consensus 385 --~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l 422 (853)
T Consensus 206 ~~~~s~~a~---------~~L~~y~WPGNvrEL~n~iera 236 (325)
T PRK11608 206 FPGFTERAR---------ETLLNYRWPGNIRELKNVVERS 236 (325)
T ss_pred CCCCCHHHH---------HHHHCCCCCCHHHHHHHHHHHH
T ss_conf 888899999---------9996199996599999999999