HHsearch alignment for GI: 254780877 and conserved domain: PRK11889

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.64  E-value=0.0047  Score=43.79  Aligned_cols=142  Identities=20%  Similarity=0.315  Sum_probs=70.9

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC--CCCCCCHH---HHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCC-
Q ss_conf             65128987267861688999999987237765--30022447---7403453201304771120356677421132215-
Q gi|254780877|r  596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDEN--SMIRIDMS---EYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRH-  669 (853)
Q Consensus       596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~--~lir~dMs---ey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~-  669 (853)
T Consensus       239 ~~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV-~VV~dp-~eL~~AL~~lk  316 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-IAVRDE-AAMTRALTYFK  316 (436)
T ss_pred             HHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE-EEECCH-HHHHHHHHHHH
T ss_conf             4171799989999888999999999986169808999806634769999999999849943-996888-99999999876


Q ss_pred             ---CCCEEEEHHHHHCCHHHHH--HHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             ---6410220214414989999--99998404578879997783033155954851268764032679999999998628
Q gi|254780877|r  670 ---PYQVVLFDEIEKAHSDVHN--ILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAF  744 (853)
Q Consensus       670 ---P~sVil~DEiEKah~~v~~--~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f  744 (853)
T Consensus       317 dka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~----------p~ev~LVLSATTK~------------~DL~eIi~rF  374 (436)
T PRK11889        317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVE----------PDYICLTLSASMKS------------KDMIEIITNF  374 (436)
T ss_pred             HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC----------CCEEEEEEECCCCH------------HHHHHHHHHH
T ss_conf             3368888999298988468999999999985127----------77169999788998------------9999999972


Q ss_pred             CHHHHCCCCCEEECCCCCHHH
Q ss_conf             857726668158628899899
Q gi|254780877|r  745 KPEFLNRLDEIILFEKLRKED  765 (853)
Q Consensus       745 ~peflnRid~iv~F~~l~~~~  765 (853)
T Consensus       375 ~~--l~-id-glIfTKLDET~  391 (436)
T PRK11889        375 KD--IH-ID-GIVFTKFDETA  391 (436)
T ss_pred             CC--CC-CC-EEEEEECCCCC
T ss_conf             57--99-88-28997132568