HHsearch alignment for GI: 254780877 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.13 E-value=3e-09 Score=94.13 Aligned_cols=184 Identities=18% Similarity=0.381 Sum_probs=120.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHCCCCCC--
Q ss_conf 67459489999999999874101236566512898726786168899999998723776--53002244774034532--
Q gi|254780877|r 568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDE--NSMIRIDMSEYMEKHSV-- 643 (853)
Q Consensus 568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~--~~lir~dMsey~e~~~v-- 643 (853)
T Consensus 15 ~dvvGq~~i~~~L~~~~~~-------~~~p--hlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i 85 (337)
T PRK12402 15 EDILGQESVVDHLSALAAS-------GNLP--HLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYL 85 (337)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE
T ss_conf 9803979999999999977-------9987--698889298489999999999967997567833311653113564001
Q ss_pred ------CHHHCCCCHHCCCCCCCCCCHHH----H----CCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEEC
Q ss_conf ------01304771120356677421132----2----156410220214414989999999984045788799977830
Q gi|254780877|r 644 ------SRLIGSPPGYVGYEEGGALTEAV----R----RHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDF 709 (853)
Q Consensus 644 ------s~LiGappGYvG~~~gg~Lte~v----r----~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f 709 (853)
T Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~-----------~ 153 (337)
T PRK12402 86 VEDPRFAHFYDDP-KRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERY-----------S 153 (337)
T ss_pred ECCCCHHHHHCCH-HHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------C
T ss_conf 0166423442015-332773789999999998614887788049997071317999999999887408-----------8
Q ss_pred CCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 33155954851268764032679999999998628857726668158628899899999999999999999985798999
Q gi|254780877|r 710 RNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMD 789 (853)
Q Consensus 710 ~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 789 (853)
T Consensus 154 ~~~~fIl~t~~~~--------------------~ii~tI~SRC-~~i~F~~~s~~~i~~~L~~-------I~~~E~i--~ 203 (337)
T PRK12402 154 ETCRFIFSTTQPS--------------------KLIPPIRSRC-LPLFFRPVPDDEIRSVLES-------IAAAEGV--E 203 (337)
T ss_pred CCEEEEEECCCCC--------------------CCCHHHHHHC-EEEECCCCCHHHHHHHHHH-------HHHHCCC--C
T ss_conf 7669987238644--------------------4752477624-4543589899999999999-------9998499--9
Q ss_pred ECHHHHHHHHHCC
Q ss_conf 9889999999708
Q gi|254780877|r 790 FDDQVIDWLSCRG 802 (853)
Q Consensus 790 ~~~~~~~~l~~~~ 802 (853)
T Consensus 204 ~~~~~l~~ia~~s 216 (337)
T PRK12402 204 ISDDGLDLIAYYA 216 (337)
T ss_pred CCHHHHHHHHHHC
T ss_conf 8999999999986