HHsearch alignment for GI: 254780877 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.31  E-value=5.1e-11  Score=108.51  Aligned_cols=92  Identities=11%  Similarity=0.039  Sum_probs=38.5

Q ss_pred             HCCHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHCCC-----------CHHHHHHHHHHHHH
Q ss_conf             7179999999999999998289----96338999999861887668999997399-----------98999999999997
Q gi|254780877|r    5 KYSDLMRNVLQSAQTYALAQGH----QNLVPEHVLHIFLEDEQGAVYSLIQCSGG-----------DIAQLKDYNQTVLS   69 (853)
Q Consensus         5 kFS~~a~~vL~~A~~~A~~~~H----~~Vt~EHLLlaLL~~~~s~i~~iL~~~gv-----------d~~~L~~~le~~L~   69 (853)
T Consensus         3 lf~~~~~~~~~~~aPLA~rmRP~~Lde~vGQ~hllg-----~g~~Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~   77 (726)
T PRK13341          3 LFAFHGEQQRRSEAPLADRLRPRTLEEFVGQDHILG-----EGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR   77 (726)
T ss_pred             HHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCHHHCC-----CCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             155647765332698568629998777359575428-----982899999769998278889799999999999988748


Q ss_pred             H-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4-5954789777706989999999999999971987
Q gi|254780877|r   70 K-IPKVTGGGAQVYLSQPLAVILSKSEEIAKKSGDS  104 (853)
Q Consensus        70 k-~~k~~~~~~~~~~S~~l~rvL~~A~~~A~~~g~~  104 (853)
T Consensus        78 ~~F~~lsA---v~sgvkdlr~ii~~A~~~~~~~g~~  110 (726)
T PRK13341         78 AHFSSLNA---VLAGVKDLRAEVDAAKERLERHGKR  110 (726)
T ss_pred             CCEEEEEC---CCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             86799856---2037799999999999998745996