HHsearch alignment for GI: 254780877 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.31 E-value=5.1e-11 Score=108.51 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=38.5
Q ss_pred HCCHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHCCC-----------CHHHHHHHHHHHHH
Q ss_conf 7179999999999999998289----96338999999861887668999997399-----------98999999999997
Q gi|254780877|r 5 KYSDLMRNVLQSAQTYALAQGH----QNLVPEHVLHIFLEDEQGAVYSLIQCSGG-----------DIAQLKDYNQTVLS 69 (853)
Q Consensus 5 kFS~~a~~vL~~A~~~A~~~~H----~~Vt~EHLLlaLL~~~~s~i~~iL~~~gv-----------d~~~L~~~le~~L~ 69 (853)
T Consensus 3 lf~~~~~~~~~~~aPLA~rmRP~~Lde~vGQ~hllg-----~g~~Lrr~i~~~~~~S~Il~GPPGtGKTTLA~iIA~~t~ 77 (726)
T PRK13341 3 LFAFHGEQQRRSEAPLADRLRPRTLEEFVGQDHILG-----EGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR 77 (726)
T ss_pred HHHHHHHHHHHCCCCCHHHHCCCCHHHHCCCHHHCC-----CCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 155647765332698568629998777359575428-----982899999769998278889799999999999988748
Q ss_pred H-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4-5954789777706989999999999999971987
Q gi|254780877|r 70 K-IPKVTGGGAQVYLSQPLAVILSKSEEIAKKSGDS 104 (853)
Q Consensus 70 k-~~k~~~~~~~~~~S~~l~rvL~~A~~~A~~~g~~ 104 (853)
T Consensus 78 ~~F~~lsA---v~sgvkdlr~ii~~A~~~~~~~g~~ 110 (726)
T PRK13341 78 AHFSSLNA---VLAGVKDLRAEVDAAKERLERHGKR 110 (726)
T ss_pred CCEEEEEC---CCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 86799856---2037799999999999998745996