HHsearch alignment for GI: 254780877 and conserved domain: PRK13833

>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=96.24  E-value=0.02  Score=38.62  Aligned_cols=90  Identities=23%  Similarity=0.389  Sum_probs=50.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCCC-CHHHHCC--CCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEE
Q ss_conf             89872678616889999999872377--6530022-4477403--45320130477112035667742113221564102
Q gi|254780877|r  600 SFMFLGPTGVGKTELVKSLARLLFDD--ENSMIRI-DMSEYME--KHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVV  674 (853)
Q Consensus       600 ~flf~GptGvGKTelak~la~~lf~~--~~~lir~-dMsey~e--~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVi  674 (853)
T Consensus       146 nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~EL~~~~~n~v-~l~~~--~~v~~~--~Ll~~aLRmrPDRIi  220 (323)
T PRK13833        146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAV-LLHTS--DTVDMA--RLLKSTMRLRPDRII  220 (323)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCEE-EEECC--CCCCHH--HHHHHHHCCCCCEEE
T ss_conf             6899917777568999999986402893233999457501146788777-87516--986999--999997446997588


Q ss_pred             EEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf             202144149899999999840457
Q gi|254780877|r  675 LFDEIEKAHSDVHNILLQVLDDGR  698 (853)
Q Consensus       675 l~DEiEKah~~v~~~llqild~G~  698 (853)
T Consensus       221 v-GEvR--G~EA~-~~L~A~nTGH  240 (323)
T PRK13833        221 V-GEVR--DGAAL-TLLKAWNTGH  240 (323)
T ss_pred             E-ECCC--CHHHH-HHHHHHHCCC
T ss_conf             8-3006--59999-9999982799