HHsearch alignment for GI: 254780877 and conserved domain: PRK13833
>PRK13833 conjugal transfer protein TrbB; Provisional.
Probab=96.24 E-value=0.02 Score=38.62 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=50.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCC--CCCCCCC-CHHHHCC--CCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEE
Q ss_conf 89872678616889999999872377--6530022-4477403--45320130477112035667742113221564102
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDD--ENSMIRI-DMSEYME--KHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVV 674 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~--~~~lir~-dMsey~e--~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVi 674 (853)
T Consensus 146 nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtIEDt~EL~~~~~n~v-~l~~~--~~v~~~--~Ll~~aLRmrPDRIi 220 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAV-LLHTS--DTVDMA--RLLKSTMRLRPDRII 220 (323)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCEE-EEECC--CCCCHH--HHHHHHHCCCCCEEE
T ss_conf 6899917777568999999986402893233999457501146788777-87516--986999--999997446997588
Q ss_pred EEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 202144149899999999840457
Q gi|254780877|r 675 LFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 675 l~DEiEKah~~v~~~llqild~G~ 698 (853)
T Consensus 221 v-GEvR--G~EA~-~~L~A~nTGH 240 (323)
T PRK13833 221 V-GEVR--DGAAL-TLLKAWNTGH 240 (323)
T ss_pred E-ECCC--CHHHH-HHHHHHHCCC
T ss_conf 8-3006--59999-9999982799