HHsearch alignment for GI: 254780877 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=95.88 E-value=0.013 Score=40.07 Aligned_cols=111 Identities=25% Similarity=0.374 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEE-HHHHHCCCCCCCHHHHHHHHH
Q ss_conf 7899999996336777866895288740777999999987348998444574378873-135421745420245458999
Q gi|254780877|r 184 DDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALD-MGALIAGAKFRGEFEERLKSL 262 (853)
Q Consensus 184 e~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld-~~~l~ag~~~rg~~e~r~~~i 262 (853)
T Consensus 148 ~~~~~~fL~~aV~-~r~NIlIsGgTGSGKTTllnALl~~I-----P~---~eRIvtIEDt~EL----------------- 201 (343)
T PRK13851 148 NGDLEAFLHACVV-GRLTMLLCGPTGSGKTTMSKTLISAI-----PP---QERLITIEDTLEL----------------- 201 (343)
T ss_pred CHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHCC-----CC---CCCEEEECCCCCC-----------------
T ss_conf 3779999999997-69889998889861999999999628-----96---5527996115002-----------------
Q ss_pred HHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCC
Q ss_conf 99986079976999636277302666554335888876531246604899744899999730011132023111115777
Q gi|254780877|r 263 LCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPT 342 (853)
Q Consensus 263 ~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps 342 (853)
T Consensus 202 --~l-~~~n~V~l~~~~------~~~g~~~vt~~~Ll~~aL--------------------------RmrPDRIivGEvR 246 (343)
T PRK13851 202 --VI-PHENHVRLLYSK------NGAGLGAVTAEHLLQASL--------------------------RMRPDRILLGEMR 246 (343)
T ss_pred --CC-CCCCEEEEEECC------CCCCCCCCCHHHHHHHHH--------------------------CCCCCEEEEEEEC
T ss_conf --58-999968999658------988858397999999986--------------------------0799828998526
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6789999999789
Q gi|254780877|r 343 VTDTISILRGLKE 355 (853)
Q Consensus 343 ~~~t~~iL~gl~~ 355 (853)
T Consensus 247 G~EA~d~L~A~nT 259 (343)
T PRK13851 247 DDAAWAYLSEVVS 259 (343)
T ss_pred CHHHHHHHHHHHC
T ss_conf 6999999999846