HHsearch alignment for GI: 254780877 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=96.95 E-value=0.0012 Score=48.46 Aligned_cols=90 Identities=21% Similarity=0.402 Sum_probs=59.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHC---CCCCCCHHHCCCCHHCCCCCCC-----CCCHHHHCCC
Q ss_conf 898726786168899999998723776530022-447740---3453201304771120356677-----4211322156
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYM---EKHSVSRLIGSPPGYVGYEEGG-----ALTEAVRRHP 670 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~---e~~~vs~LiGappGYvG~~~gg-----~Lte~vr~~P 670 (853)
T Consensus 162 NilI~G~TgSGKTTll~aL~~~ip~~e-RiitIEDt~EL~l~~~pn~v-~l~~~~~~---~g~~~vt~~~Ll~~aLR~rP 236 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAIE-RLITVEDAREIVLSSHPNRV-HLLASKGG---QGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCC-CEEEECCCHHHCCCCCCCEE-EEEECCCC---CCCCEECHHHHHHHHHCCCC
T ss_conf 199988889889999999983589535-35663140663566688889-99971688---88660869999999756899
Q ss_pred CCEEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 4102202144149899999999840457
Q gi|254780877|r 671 YQVVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 671 ~sVil~DEiEKah~~v~~~llqild~G~ 698 (853)
T Consensus 237 DR-IivGEvR--G~EA~~-~l~A~nTGH 260 (332)
T PRK13900 237 DR-IIVGELR--GAEAFS-FLRAINTGH 260 (332)
T ss_pred CE-EEECCCC--HHHHHH-HHHHHHCCC
T ss_conf 75-8445557--199999-999997699