HHsearch alignment for GI: 254780877 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=96.37 E-value=0.11 Score=32.77 Aligned_cols=113 Identities=19% Similarity=0.325 Sum_probs=68.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 89999999633677786689528874077799999998734899844457437887313542174542024545899999
Q gi|254780877|r 185 DEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLC 264 (853)
Q Consensus 185 ~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~ 264 (853)
T Consensus 147 ~~~~~fL~~aV-~~r~NilI~G~TgSGKTTll~aL~~~ip~~--------eRiitIED-----------t~EL------- 199 (332)
T PRK13900 147 KKIKEFLEHAV-ISKKNIIISGGTSTGKTTFTNAALREIPAI--------ERLITVED-----------AREI------- 199 (332)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCCC--------CCEEEECC-----------CHHH-------
T ss_conf 57999999998-648719998888988999999998358953--------53566314-----------0663-------
Q ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHH
Q ss_conf 98607997699963627730266655433588887653124660489974489999973001113202311111577767
Q gi|254780877|r 265 EIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVT 344 (853)
Q Consensus 265 ~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~ 344 (853)
T Consensus 200 ~l~~~pn~v~l~~~~------~~~g~~~vt~~~Ll~~aL--------------------------R~rPDRIivGEvRG~ 247 (332)
T PRK13900 200 VLSSHPNRVHLLASK------GGQGRAKVTTQDLIEACL--------------------------RLRPDRIIVGELRGA 247 (332)
T ss_pred CCCCCCCEEEEEECC------CCCCCCEECHHHHHHHHH--------------------------CCCCCEEEECCCCHH
T ss_conf 566688889999716------888866086999999975--------------------------689975844555719
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999997898
Q gi|254780877|r 345 DTISILRGLKER 356 (853)
Q Consensus 345 ~t~~iL~gl~~~ 356 (853)
T Consensus 248 EA~~~l~A~nTG 259 (332)
T PRK13900 248 EAFSFLRAINTG 259 (332)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999769