HHsearch alignment for GI: 254780877 and conserved domain: PRK13900

>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=96.37  E-value=0.11  Score=32.77  Aligned_cols=113  Identities=19%  Similarity=0.325  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             89999999633677786689528874077799999998734899844457437887313542174542024545899999
Q gi|254780877|r  185 DEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLC  264 (853)
Q Consensus       185 ~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~  264 (853)
T Consensus       147 ~~~~~fL~~aV-~~r~NilI~G~TgSGKTTll~aL~~~ip~~--------eRiitIED-----------t~EL-------  199 (332)
T PRK13900        147 KKIKEFLEHAV-ISKKNIIISGGTSTGKTTFTNAALREIPAI--------ERLITVED-----------AREI-------  199 (332)
T ss_pred             HHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCCC--------CCEEEECC-----------CHHH-------
T ss_conf             57999999998-648719998888988999999998358953--------53566314-----------0663-------


Q ss_pred             HHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHH
Q ss_conf             98607997699963627730266655433588887653124660489974489999973001113202311111577767
Q gi|254780877|r  265 EIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVT  344 (853)
Q Consensus       265 ~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~  344 (853)
T Consensus       200 ~l~~~pn~v~l~~~~------~~~g~~~vt~~~Ll~~aL--------------------------R~rPDRIivGEvRG~  247 (332)
T PRK13900        200 VLSSHPNRVHLLASK------GGQGRAKVTTQDLIEACL--------------------------RLRPDRIIVGELRGA  247 (332)
T ss_pred             CCCCCCCEEEEEECC------CCCCCCEECHHHHHHHHH--------------------------CCCCCEEEECCCCHH
T ss_conf             566688889999716------888866086999999975--------------------------689975844555719


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999997898
Q gi|254780877|r  345 DTISILRGLKER  356 (853)
Q Consensus       345 ~t~~iL~gl~~~  356 (853)
T Consensus       248 EA~~~l~A~nTG  259 (332)
T PRK13900        248 EAFSFLRAINTG  259 (332)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999769