HHsearch alignment for GI: 254780877 and conserved domain: PRK13946

>PRK13946 shikimate kinase; Provisional.
Probab=96.84  E-value=0.034  Score=36.77  Aligned_cols=145  Identities=18%  Similarity=0.277  Sum_probs=67.7

Q ss_pred             HHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC--CCCHHHCCCEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHH
Q ss_conf             996336777866895288740777999999987348--9984445743788731354217454202--454589999998
Q gi|254780877|r  191 IQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIING--DIPESLKGKRLMALDMGALIAGAKFRGE--FEERLKSLLCEI  266 (853)
Q Consensus       191 ~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--~e~r~~~i~~~~  266 (853)
T Consensus        12 ~~~~~~l~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~~IE--~~~g~sI~eIF~---~~GE~~FR~~E~~~l~~l   86 (195)
T PRK13946         12 EQIRAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIE--RAARMTIPEIFA---TYGEPEFRDLERRVIARL   86 (195)
T ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHHH--HHHCCCHHHHHH---HHCHHHHHHHHHHHHHHH
T ss_conf             999998589958998999998899999999997979898859999--980998999999---869799999899999998


Q ss_pred             HHCCCCEEEEECCHHHHCCCCCCCCCCCHHH--HHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHH
Q ss_conf             6079976999636277302666554335888--87653124660489974489999973001113202311111577767
Q gi|254780877|r  267 RSEDGEIILFIDELHVLVGAGKTDGAMDASN--LLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVT  344 (853)
Q Consensus       267 ~~~~~~~ilfide~h~~~gaG~~~g~~Daan--~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~  344 (853)
T Consensus        87 ~~~~-~~V---------IstGGG~-v~~~~n~~~L~---~~g~v-I~L~~~~e~l~~Rl~~~~--~RP----Ll~~~~~~  145 (195)
T PRK13946         87 LKGG-PLV---------LATGGGA-FMNEETRAAIR---EKGIS-VWLKADLDVLWERVSRRD--TRP----LLRTADPK  145 (195)
T ss_pred             HCCC-CEE---------EECCCCC-CCCHHHHHHHH---HCCEE-EEEECCHHHHHHHHCCCC--CCC----CCCCCCHH
T ss_conf             6489-879---------9758742-36899999999---57968-998499999999972899--999----89998879


Q ss_pred             HHH-HHHHHHHHHHHHHC
Q ss_conf             899-99999789865414
Q gi|254780877|r  345 DTI-SILRGLKERYEQHH  361 (853)
Q Consensus       345 ~t~-~iL~gl~~~yE~~H  361 (853)
T Consensus       146 ~~l~~l~~~R~~lY~~Ad  163 (195)
T PRK13946        146 ETLARLMEERYPVYAQAD  163 (195)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999789