HHsearch alignment for GI: 254780877 and conserved domain: TIGR01243

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.78  E-value=6e-14  Score=132.35  Aligned_cols=463  Identities=23%  Similarity=0.391  Sum_probs=243.4

Q ss_pred             HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             96336777866895288740777999999987348998444574378873135421745420245458999999860799
Q gi|254780877|r  192 QVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG  271 (853)
Q Consensus       192 ~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~  271 (853)
T Consensus       233 ~~lGiePPkG~ll~GPPGtGktllaka~ane~----------~a~f~~inGPeim--sky~Ge~e~~lr~if~eaeen-a  299 (980)
T TIGR01243       233 EKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFIAINGPEIM--SKYYGESEERLREIFKEAEEN-A  299 (980)
T ss_pred             HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCEEEEECCCHHH--HHHCCCCHHHHHHHHHHHHHC-C
T ss_conf             86188998735875589861789999987530----------5517885060344--331363078999999865305-8


Q ss_pred             CEEEEECCHHHHCCCCC-CCCCCC---HH---HHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCC
Q ss_conf             76999636277302666-554335---88---88765312466048997448999997300111320--2311-111577
Q gi|254780877|r  272 EIILFIDELHVLVGAGK-TDGAMD---AS---NLLKPSLARGELHCIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEP  341 (853)
Q Consensus       272 ~~ilfide~h~~~gaG~-~~g~~D---aa---n~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Ep  341 (853)
T Consensus       300 P~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~-----a~dPalrrPGrfdrei~~~~P  374 (980)
T TIGR01243       300 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPD-----ALDPALRRPGRFDREIEIGVP  374 (980)
T ss_pred             CCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCCHHHCCCCCCCCEEEECCC
T ss_conf             707874121100764100001688999999999974002487289981468850-----026224278864433574188


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             76789999999789865414961015899-99986333202457674778999999999875410222145788799999
Q gi|254780877|r  342 TVTDTISILRGLKERYEQHHKVRISDSAL-VSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRII  420 (853)
Q Consensus       342 s~~~t~~iL~gl~~~yE~~H~V~i~d~al-~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~  420 (853)
T Consensus       375 d~~~r~eil~~htr------~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------  435 (980)
T TIGR01243       375 DKEGRKEILQIHTR------NMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSE-----DEI--------  435 (980)
T ss_pred             CHHHHHHHHHHHHC------CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--------
T ss_conf             54567888876414------78750110057899999876665566788999999988631026-----789--------


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCHHHHH
Q ss_conf             74456999850222356656899987689999999999998886566765599999998--8748888886421115676
Q gi|254780877|r  421 CLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRL--ESMRNELAIAQRQGHFERA  498 (853)
Q Consensus       421 ~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l--~~~~~~~~~~~~~~~~~~~  498 (853)
T Consensus       436 -----~~~~~~~~~~~~~~~----~~~~~~~l~~la~~thG~~Gad-----laal~~eaam~~lrr~~~eg~i~---~ea  498 (980)
T TIGR01243       436 -----KEILKEDGNVYVEVR----NRLIDKLLDKLAEVTHGFVGAD-----LAALAKEAAMAALRRLIREGKIN---LEA  498 (980)
T ss_pred             -----HHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHHHHHHHHCCCCCC---HHH
T ss_conf             -----999750121246789----9999999998865423620355-----99998999999999874027745---026


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             54320110689999999997511267720001686678999876617866775100000001235547767459489999
Q gi|254780877|r  499 GELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVE  578 (853)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~  578 (853)
T Consensus       499 ~~iP~~vl~~lkvt~~df~ealk--------~~~P~~~re~~~evP~v~W~di-----GGlee~kq~lr-------eave  558 (980)
T TIGR01243       499 EEIPKEVLEELKVTMKDFKEALK--------MVEPSALREVLVEVPNVKWEDI-----GGLEEVKQELR-------EAVE  558 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHEEEEECCCCCCCCC-----CCHHHHHHHHH-------HHHH
T ss_conf             77579999873222899999985--------1062341100023375110014-----66789999998-------7752


Q ss_pred             HHHHHH-HHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCC
Q ss_conf             999999-8741012365665128987267861688999999987237765300224477403453201304771120356
Q gi|254780877|r  579 SVSNAL-RRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYE  657 (853)
Q Consensus       579 ~v~~~~-~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~  657 (853)
T Consensus       559 WPlk~~~~f~k~G~~PP---~Gvll~-GPPGtGktllakava~e---s~anfi~v~GPe~-----lskWvGe-------s  619 (980)
T TIGR01243       559 WPLKAPEVFEKLGIRPP---KGVLLF-GPPGTGKTLLAKAVATE---SGANFIAVRGPEI-----LSKWVGE-------S  619 (980)
T ss_pred             CCCCHHHHHHHCCCCCC---CCEEEE-CCCCCCHHHHHHHHHHC---CCCCEEEECCCHH-----HHHHHCH-------H
T ss_conf             34440589986078899---734874-68986168888877401---4564677407312-----2344032-------4


Q ss_pred             CC--CCCCHHHHCCCCCEEEEHHHHHCCHH-------------HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHH
Q ss_conf             67--74211322156410220214414989-------------9999999840457887999778303315595485126
Q gi|254780877|r  658 EG--GALTEAVRRHPYQVVLFDEIEKAHSD-------------VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA  722 (853)
Q Consensus       658 ~g--g~Lte~vr~~P~sVil~DEiEKah~~-------------v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~  722 (853)
T Consensus       620 e~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~d-G--------~~~~~~vvvi~atnr--  688 (980)
T TIGR01243       620 EKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELD-G--------LEELSDVVVIAATNR--  688 (980)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-C--------CCCCCCEEEEEECCC--
T ss_conf             79999999986412873787302111054124421001026899999998640-4--------434366589861588--


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf             8764032679999999998628857726668158628899899999999999
Q gi|254780877|r  723 EYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL  774 (853)
Q Consensus       723 ~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l  774 (853)
T Consensus       689 ------Pdi~dPa-------llrP---Gr~dr~i~vP~Pd~~ar~~ifk~ht  724 (980)
T TIGR01243       689 ------PDILDPA-------LLRP---GRLDRLILVPAPDEEARLEIFKIHT  724 (980)
T ss_pred             ------CCCCCCC-------CCCC---CCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             ------7423610-------0488---7412168605985567676765531