HHsearch alignment for GI: 254780877 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.78 E-value=6e-14 Score=132.35 Aligned_cols=463 Identities=23% Similarity=0.391 Sum_probs=243.4
Q ss_pred HHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 96336777866895288740777999999987348998444574378873135421745420245458999999860799
Q gi|254780877|r 192 QVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG 271 (853)
Q Consensus 192 ~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~ 271 (853)
T Consensus 233 ~~lGiePPkG~ll~GPPGtGktllaka~ane~----------~a~f~~inGPeim--sky~Ge~e~~lr~if~eaeen-a 299 (980)
T TIGR01243 233 EKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFIAINGPEIM--SKYYGESEERLREIFKEAEEN-A 299 (980)
T ss_pred HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCEEEEECCCHHH--HHHCCCCHHHHHHHHHHHHHC-C
T ss_conf 86188998735875589861789999987530----------5517885060344--331363078999999865305-8
Q ss_pred CEEEEECCHHHHCCCCC-CCCCCC---HH---HHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCC
Q ss_conf 76999636277302666-554335---88---88765312466048997448999997300111320--2311-111577
Q gi|254780877|r 272 EIILFIDELHVLVGAGK-TDGAMD---AS---NLLKPSLARGELHCIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEP 341 (853)
Q Consensus 272 ~~ilfide~h~~~gaG~-~~g~~D---aa---n~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Ep 341 (853)
T Consensus 300 P~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~-----a~dPalrrPGrfdrei~~~~P 374 (980)
T TIGR01243 300 PSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPD-----ALDPALRRPGRFDREIEIGVP 374 (980)
T ss_pred CCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCCHHHCCCCCCCCEEEECCC
T ss_conf 707874121100764100001688999999999974002487289981468850-----026224278864433574188
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 76789999999789865414961015899-99986333202457674778999999999875410222145788799999
Q gi|254780877|r 342 TVTDTISILRGLKERYEQHHKVRISDSAL-VSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRII 420 (853)
Q Consensus 342 s~~~t~~iL~gl~~~yE~~H~V~i~d~al-~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~ 420 (853)
T Consensus 375 d~~~r~eil~~htr------~mP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-------- 435 (980)
T TIGR01243 375 DKEGRKEILQIHTR------NMPLAEDVDKDAVIKVLKDLEKDERFEKEKIEKIIEKVSKANSE-----DEI-------- 435 (980)
T ss_pred CHHHHHHHHHHHHC------CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--------
T ss_conf 54567888876414------78750110057899999876665566788999999988631026-----789--------
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCHHHHH
Q ss_conf 74456999850222356656899987689999999999998886566765599999998--8748888886421115676
Q gi|254780877|r 421 CLKIEKEALKKEKDSFSKGRLIELEKELSSLEEKSHSLTLRWQEGQRKILYVADLKKRL--ESMRNELAIAQRQGHFERA 498 (853)
Q Consensus 421 ~l~~e~~~L~~e~d~~~~~rl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l--~~~~~~~~~~~~~~~~~~~ 498 (853)
T Consensus 436 -----~~~~~~~~~~~~~~~----~~~~~~~l~~la~~thG~~Gad-----laal~~eaam~~lrr~~~eg~i~---~ea 498 (980)
T TIGR01243 436 -----KEILKEDGNVYVEVR----NRLIDKLLDKLAEVTHGFVGAD-----LAALAKEAAMAALRRLIREGKIN---LEA 498 (980)
T ss_pred -----HHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHHHHHHHHCCCCCC---HHH
T ss_conf -----999750121246789----9999999998865423620355-----99998999999999874027745---026
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 54320110689999999997511267720001686678999876617866775100000001235547767459489999
Q gi|254780877|r 499 GELAYGLIPKTEKELDEAEKADSTAEDMVQEVVTSDNIANIVSRWTGIPVDKMLESDREKFLRIETEISKSVIGQSAAVE 578 (853)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E~ekLl~l~~~l~~~v~gq~~ai~ 578 (853)
T Consensus 499 ~~iP~~vl~~lkvt~~df~ealk--------~~~P~~~re~~~evP~v~W~di-----GGlee~kq~lr-------eave 558 (980)
T TIGR01243 499 EEIPKEVLEELKVTMKDFKEALK--------MVEPSALREVLVEVPNVKWEDI-----GGLEEVKQELR-------EAVE 558 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHEEEEECCCCCCCCC-----CCHHHHHHHHH-------HHHH
T ss_conf 77579999873222899999985--------1062341100023375110014-----66789999998-------7752
Q ss_pred HHHHHH-HHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCC
Q ss_conf 999999-8741012365665128987267861688999999987237765300224477403453201304771120356
Q gi|254780877|r 579 SVSNAL-RRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYE 657 (853)
Q Consensus 579 ~v~~~~-~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~ 657 (853)
T Consensus 559 WPlk~~~~f~k~G~~PP---~Gvll~-GPPGtGktllakava~e---s~anfi~v~GPe~-----lskWvGe-------s 619 (980)
T TIGR01243 559 WPLKAPEVFEKLGIRPP---KGVLLF-GPPGTGKTLLAKAVATE---SGANFIAVRGPEI-----LSKWVGE-------S 619 (980)
T ss_pred CCCCHHHHHHHCCCCCC---CCEEEE-CCCCCCHHHHHHHHHHC---CCCCEEEECCCHH-----HHHHHCH-------H
T ss_conf 34440589986078899---734874-68986168888877401---4564677407312-----2344032-------4
Q ss_pred CC--CCCCHHHHCCCCCEEEEHHHHHCCHH-------------HHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHH
Q ss_conf 67--74211322156410220214414989-------------9999999840457887999778303315595485126
Q gi|254780877|r 658 EG--GALTEAVRRHPYQVVLFDEIEKAHSD-------------VHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGA 722 (853)
Q Consensus 658 ~g--g~Lte~vr~~P~sVil~DEiEKah~~-------------v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~ 722 (853)
T Consensus 620 e~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~d-G--------~~~~~~vvvi~atnr-- 688 (980)
T TIGR01243 620 EKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELD-G--------LEELSDVVVIAATNR-- 688 (980)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH-C--------CCCCCCEEEEEECCC--
T ss_conf 79999999986412873787302111054124421001026899999998640-4--------434366589861588--
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
Q ss_conf 8764032679999999998628857726668158628899899999999999
Q gi|254780877|r 723 EYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQL 774 (853)
Q Consensus 723 ~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l 774 (853)
T Consensus 689 ------Pdi~dPa-------llrP---Gr~dr~i~vP~Pd~~ar~~ifk~ht 724 (980)
T TIGR01243 689 ------PDILDPA-------LLRP---GRLDRLILVPAPDEEARLEIFKIHT 724 (980)
T ss_pred ------CCCCCCC-------CCCC---CCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf ------7423610-------0488---7412168605985567676765531