HHsearch alignment for GI: 254780877 and conserved domain: TIGR01818
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=98.04 E-value=0.0012 Score=48.47 Aligned_cols=233 Identities=27% Similarity=0.420 Sum_probs=155.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH----HHCCCC
Q ss_conf 7767459489999999999874101236566512898726786168899999998723776530022447----740345
Q gi|254780877|r 566 ISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMS----EYMEKH 641 (853)
Q Consensus 566 l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMs----ey~e~~ 641 (853)
T Consensus 133 ~~~~liG~aPAMQevfR~igRL~------~~~l-~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAIP~~L~E-- 203 (471)
T TIGR01818 133 DSAELIGEAPAMQEVFRAIGRLS------RSDL-SVLINGESGTGKELVARALHRHSPRARGPFIALNMAAIPKDLIE-- 203 (471)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC------CCCC-EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHCCHHHHH--
T ss_conf 56212368851689999999751------6960-58885575775899999840137555777327302322246655--
Q ss_pred CCCHHHCCCCHHCCCCCCCCCCHHHHCC-------CCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEE
Q ss_conf 3201304771120356677421132215-------641022021441498999999998404578879997783033155
Q gi|254780877|r 642 SVSRLIGSPPGYVGYEEGGALTEAVRRH-------PYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLI 714 (853)
Q Consensus 642 ~vs~LiGappGYvG~~~gg~Lte~vr~~-------P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~ii 714 (853)
T Consensus 204 --SELFG-------HEk-GAFTGA~~~~~GRFEQA~GGTLFLDEIGDMPl~~QTRLLRVL~~G~f~rVGG~~p~k~DVRi 273 (471)
T TIGR01818 204 --SELFG-------HEK-GAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDLQTRLLRVLADGEFYRVGGRTPIKVDVRI 273 (471)
T ss_pred --HHHCC-------CCC-CCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEEEEE
T ss_conf --43214-------565-30001025567772534888210102167877687779886407865772682024550466
Q ss_pred EECCCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCEEECC--CCC--HHHHHHHHHHHHHHHHHHHHHCCCEE-
Q ss_conf 95485126876403267999999999-8628857726668158628--899--89999999999999999998579899-
Q gi|254780877|r 715 IMTSNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEIILFE--KLR--KEDMAKIVRIQLGRVLSLIKERNISM- 788 (853)
Q Consensus 715 i~TsN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~iv~F~--~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l- 788 (853)
T Consensus 274 ~AATh--------------q~Le~lv~~G~FReDLfhRL~-Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l---~~~~k 335 (471)
T TIGR01818 274 VAATH--------------QDLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLALAAKEL---DVEPK 335 (471)
T ss_pred EECCC--------------HHHHHHHHCCCCHHHHHHHHC-EEEECCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCCC
T ss_conf 73366--------------568999655881355555123-3462168721226689999999999988742---86511
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
Q ss_conf 998899999997089822062157999998733499999970868897889999989948
Q gi|254780877|r 789 DFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSIEVFVDDDNL 848 (853)
Q Consensus 789 ~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i~i~~~~~~~ 848 (853)
T Consensus 336 ~L~~~~~~~L~~--~~WPGNVR~LEN~cR~---------l~--~la~~~~v~~~d~~~eL 382 (471)
T TIGR01818 336 LLSPEALEALKR--YDWPGNVRELENVCRR---------LT--VLASGDEVLVSDLPAEL 382 (471)
T ss_pred CCCHHHHHHHHH--CCCCCCHHHHHHHHHH---------HH--HHCCCCEEEEEECCHHH
T ss_conf 348899999972--5889852457789999---------98--73467646777757655