HHsearch alignment for GI: 254780877 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=99.17  E-value=7.1e-10  Score=99.23  Aligned_cols=192  Identities=23%  Similarity=0.420  Sum_probs=124.4

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCH---------HHHC
Q ss_conf             6745948999999999987410123656651289872678616889999999872377653002244---------7740
Q gi|254780877|r  568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDM---------SEYM  638 (853)
Q Consensus       568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dM---------sey~  638 (853)
T Consensus        14 ~d~~GQ~~iv~tL~NAi~~~ri~--------HAYLF~GpRGtGKTS~ARIfAKaL----NC~-~~~~~PCn~C~~C~~i~   80 (363)
T TIGR02397        14 EDVIGQEHIVKTLKNAIKNGRIA--------HAYLFSGPRGTGKTSIARIFAKAL----NCQ-GPDGEPCNECESCKEIN   80 (363)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCC--------CEEEECCCCCCCHHHHHHHHHHHH----CCC-CCCCCCCCCCCHHHHHH
T ss_conf             10235179999999999718966--------234502859976355899999986----588-78778777750227765


Q ss_pred             CCCCCCHH-HCCCCHHCCCCCCCCCCHHHHCCC----CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCE
Q ss_conf             34532013-047711203566774211322156----4102202144149899999999840457887999778303315
Q gi|254780877|r  639 EKHSVSRL-IGSPPGYVGYEEGGALTEAVRRHP----YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTL  713 (853)
Q Consensus       639 e~~~vs~L-iGappGYvG~~~gg~Lte~vr~~P----~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~i  713 (853)
T Consensus        81 ~g~~~DviEiDA-ASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP-----------~hV~  148 (363)
T TIGR02397        81 SGSSLDVIEIDA-ASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-----------EHVV  148 (363)
T ss_pred             CCCCCCEEEECC-CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCC-----------CCEE
T ss_conf             289866688648-6568788999998730368755443358873230286568999876522798-----------7628


Q ss_pred             EE-ECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             59-54851268764032679999999998628857726668158628899899999999999999999985798999988
Q gi|254780877|r  714 II-MTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDD  792 (853)
Q Consensus       714 ii-~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~  792 (853)
T Consensus       149 FIlATTE~---------~------------KiP~TIlSRCQ-rF~Fk~i~~~~i~~~L~~-------I~~~E~--I~~e~  197 (363)
T TIGR02397       149 FILATTEP---------H------------KIPATILSRCQ-RFDFKRIPLEDIVERLKK-------ILDKEG--IKIED  197 (363)
T ss_pred             EEEECCCH---------H------------HCCCCCEEECE-EECCCCCCHHHHHHHHHH-------HHHHHC--CCCCH
T ss_conf             88734871---------1------------20554021000-312678998999999999-------998708--83177


Q ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             99999997089822062157999998
Q gi|254780877|r  793 QVIDWLSCRGYDPSYGARPLKRVIQR  818 (853)
Q Consensus       793 ~~~~~l~~~~~~~~~GaR~l~r~i~~  818 (853)
T Consensus       198 ~AL~~IA~~a---~GS~RDAlsllDQ  220 (363)
T TIGR02397       198 EALELIARAA---DGSMRDALSLLDQ  220 (363)
T ss_pred             HHHHHHHHHC---CCCCCHHHHHHHH
T ss_conf             8999999962---8961068899999