HHsearch alignment for GI: 254780877 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.47  E-value=3.3e-05  Score=61.28  Aligned_cols=200  Identities=24%  Similarity=0.295  Sum_probs=140.3

Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHHCC-CCCHHHCCC------------E
Q ss_conf             9872985333335789999999633677786-6895288740777999999987348-998444574------------3
Q gi|254780877|r  171 EARNGKLDPVIGRDDEMRRAIQVLSRRTKNN-PVLIGDPGVGKTAIIEGLASRIING-DIPESLKGK------------R  236 (853)
Q Consensus       171 ~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n-~~lvGe~GvGKtaive~la~~i~~~-~vp~~l~~~------------~  236 (853)
T Consensus         7 KyRP~~F~d~~GQ~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~~PCn~C~~C~~i~~g~~~D   86 (363)
T TIGR02397         7 KYRPQTFEDVIGQEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQGPDGEPCNECESCKEINSGSSLD   86 (363)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf             23788611023517999999999971896623450285997635589999998658878778777750227765289866


Q ss_pred             EEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCHHHHCCCCCCCCCCCHHH-HHHHHHCCC--CEEE
Q ss_conf             78873135421745420245458999999860799---76999636277302666554335888-876531246--6048
Q gi|254780877|r  237 LMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDG---EIILFIDELHVLVGAGKTDGAMDASN-LLKPSLARG--ELHC  310 (853)
Q Consensus       237 i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~---~~ilfide~h~~~gaG~~~g~~Daan-~LKP~LarG--~l~~  310 (853)
T Consensus        87 viEiD------AASN~gV--D~IR~l~e~v~y~P~~~kYKvYIIDEVHML--------S~~AFNALLK-TLEEPP~hV~F  149 (363)
T TIGR02397        87 VIEID------AASNNGV--DDIRELRENVKYAPSKGKYKVYIIDEVHML--------SKSAFNALLK-TLEEPPEHVVF  149 (363)
T ss_pred             EEEEC------CCCCCCH--HHHHHHHHHHCCCCCCCCCCEEEEECCCCC--------CHHHHHHHHH-HHCCCCCCEEE
T ss_conf             68864------8656878--899999873036875544335887323028--------6568999876-52279876288


Q ss_pred             EEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             99744899999730011132023111115777678999999978986541496101589999986333202457674778
Q gi|254780877|r  311 IGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKA  390 (853)
Q Consensus       311 IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKA  390 (853)
T Consensus       150 IlATT--E~~KiP--~T-IlSRCQrF~Fk~i~~~~i~~~L~~I~~~E----~I~~e~~AL~~IA~~a~GS~RD------A  214 (363)
T TIGR02397       150 ILATT--EPHKIP--AT-ILSRCQRFDFKRIPLEDIVERLKKILDKE----GIKIEDEALELIARAADGSMRD------A  214 (363)
T ss_pred             EEECC--CHHHCC--CC-CEEECEEECCCCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCCCH------H
T ss_conf             87348--711205--54-02100031267899899999999999870----8831778999999962896106------8


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999875
Q gi|254780877|r  391 IDLMDEASARVR  402 (853)
Q Consensus       391 IDllDeA~A~~~  402 (853)
T Consensus       215 lsllDQ~~~~~~  226 (363)
T TIGR02397       215 LSLLDQAISFGN  226 (363)
T ss_pred             HHHHHHHHHHCC
T ss_conf             899999998268