>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..

Probab=100.00 E-value=0 Score=2020.17 Aligned_cols=728 Identities=45% Similarity=0.748 Sum_probs=676.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCC-C------- Q ss_conf 1799999999999999982899633899999986188766899999739-998999999999997459547-8------- Q gi|254780877|r 6 YSDLMRNVLQSAQTYALAQGHQNLVPEHVLHIFLEDEQGAVYSLIQCSG-GDIAQLKDYNQTVLSKIPKVT-G------- 76 (853) Q Consensus 6 FS~~a~~vL~~A~~~A~~~~H~~Vt~EHLLlaLL~~~~s~i~~iL~~~g-vd~~~L~~~le~~L~k~~k~~-~------- 76 (853) T Consensus 1 ~~~~l~~~L~~A~~~AK~~~HEf~T~EH~Llal~~~~~--~~~il~~cgd~d~~~L~~~L~~yl~~~~~~~~~~qlGyGg 78 (774) T TIGR02639 1 ISKELERILSEALEEAKERRHEFVTLEHLLLALLDDNE--AIEILEECGDGDVELLRKKLEDYLEENLEVLEEEQLGYGG 78 (774) T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 98789999999999998618942438999999703767--8999985333118999999999875138877602244688 Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHCCCCHHHHHHHHHHHHCCCC------ Q ss_conf -97777069899999999999999719870259998766872775178-8999759998999999998737788------ Q gi|254780877|r 77 -GGAQVYLSQPLAVILSKSEEIAKKSGDSFVTAEKFLLAMVMETGGIG-ESLKKCGLKFSRLEESIKKLRKGRV------ 148 (853) Q Consensus 77 -~~~~~~~S~~l~rvL~~A~~~A~~~g~~~I~~ehLLlAIl~e~~s~a-~iL~~~gi~~~~l~e~i~~~~~~~~------ 148 (853) T Consensus 79 ~~~~ep~~T~g~~~Viq~A~~h~~s~~~~~~~~gD~Lvalf~E~~S~a~Y~Lk~qgi~Rl~~~~~ish~i~~~~~~~~~~ 158 (774) T TIGR02639 79 SEEEEPEQTVGVQRVIQRALLHVKSAGKKEIDIGDLLVALFDEEDSHASYFLKSQGITRLDILNYISHGISKDDKKDQLG 158 (774) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC T ss_conf 86556300144789999999985314886023111001110278613102033217869999997414554578756331 Q ss_pred --------------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf --------------------787775467610788644356998729853333357899999996336777866895288 Q gi|254780877|r 149 --------------------ADSVNAEQGFDALKKYCRDLTEEARNGKLDPVIGRDDEMRRAIQVLSRRTKNNPVLIGDP 208 (853) Q Consensus 149 --------------------~~~~~~e~~~~~L~ky~~DLTe~Ar~GkLDPVIGRe~EI~~~~~iL~r~~k~n~~lvGe~ 208 (853) T Consensus 159 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~aL~~yt~~Lt~~A~~GkiDPLIGRE~EleRtiQvLCRR~KNNPl~VGEP 238 (774) T TIGR02639 159 EEAAEEEEELQEEKEDSAREEDTDKAKKQQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEP 238 (774) T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCC T ss_conf 22234201431467778766566520046569988415489998608878734566887423332034567887204488 Q ss_pred CCCHHHHHHHHHHHHHCC-CCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCHHHHCCC Q ss_conf 740777999999987348-99844457437887313542174542024545899999986079976-9996362773026 Q gi|254780877|r 209 GVGKTAIIEGLASRIING-DIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEI-ILFIDELHVLVGA 286 (853) Q Consensus 209 GvGKtaive~la~~i~~~-~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~-ilfide~h~~~ga 286 (853) T Consensus 239 GVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~LLAGTKYRGDFE~RLK~V~~Ei~~~~-~anILFIDEIHTIVGA 317 (774) T TIGR02639 239 GVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEP-NANILFIDEIHTIVGA 317 (774) T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEECCCCEEEC T ss_conf 864489999999986415646700247834540434564102454247899999999985289-9954664110103317 Q ss_pred CCCC-CCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 6655-433588887653124660489974489999973001113202311111577767899999997898654149610 Q gi|254780877|r 287 GKTD-GAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRI 365 (853) Q Consensus 287 G~~~-g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i 365 (853) T Consensus 318 GATSGGsmDASNLLKPaL~~G~iRCIGsTTy~EY~~~FeKDrALsRRFQKIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y 397 (774) T TIGR02639 318 GATSGGSMDASNLLKPALASGKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKY 397 (774) T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEC T ss_conf 87875155244321125307877862265248641110102021654233117957888999999865542013250113 Q ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 15899999863332024576747789999999998754102221457887999997445699985022235665689998 Q gi|254780877|r 366 SDSALVSAAVLSNRYITDRFLPDKAIDLMDEASARVRMQIDTKPEVLDELDRRIICLKIEKEALKKEKDSFSKGRLIELE 445 (853) Q Consensus 366 ~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~A~~~i~~~~~P~~l~~l~r~i~~l~~e~~~L~~e~d~~~~~rl~~l~ 445 (853) T Consensus 398 ~~eal~~Av~LS~ryI~DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eade----------------------------- 448 (774) T TIGR02639 398 SDEALEAAVELSARYINDRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADE----------------------------- 448 (774) T ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH----------------------------- T ss_conf 869999999998886025789854322889999999971202776432011----------------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 76899999999999988865667655999999988748888886421115676543201106899999999975112677 Q gi|254780877|r 446 KELSSLEEKSHSLTLRWQEGQRKILYVADLKKRLESMRNELAIAQRQGHFERAGELAYGLIPKTEKELDEAEKADSTAED 525 (853) Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (853) T Consensus 449 ---------------------------------------------------------------------------kGlee 453 (774) T TIGR02639 449 ---------------------------------------------------------------------------KGLEE 453 (774) T ss_pred ---------------------------------------------------------------------------CCCCC T ss_conf ---------------------------------------------------------------------------25300 Q ss_pred CCHHCCCHHHHHHHHHHHHCCCHHHHHHCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE Q ss_conf 200016866789998766178667751000-0000123554776745948999999999987410123656651289872 Q gi|254780877|r 526 MVQEVVTSDNIANIVSRWTGIPVDKMLESD-REKFLRIETEISKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFL 604 (853) Q Consensus 526 ~~~~~V~~~dVa~vvS~~TGIPv~kl~~~E-~ekLl~l~~~l~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~ 604 (853) T Consensus 454 talPev~~~diE~vvak~a~iP~~~~s~ddD~~~L~~L~~~L~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~ 533 (774) T TIGR02639 454 TALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREKLKNLEKELKAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFV 533 (774) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE T ss_conf 04787854449999988718994154264479887204476301315158999999999999874247788816888864 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCH Q ss_conf 67861688999999987237765300224477403453201304771120356677421132215641022021441498 Q gi|254780877|r 605 GPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHS 684 (853) Q Consensus 605 GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~ 684 (853) T Consensus 534 GPTGVGKTElak~LA~~L---Gv~l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHp 610 (774) T TIGR02639 534 GPTGVGKTELAKQLAEEL---GVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHP 610 (774) T ss_pred CCCCCCHHHHHHHHHHHH---CCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHH T ss_conf 798962578899999970---82001046504468999987416888851316777212233128853542346666313 Q ss_pred HHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCH-----HHHHHHHHHHHHHHCCHHHHCCCCCEEECC Q ss_conf 999999998404578879997783033155954851268764032-----679999999998628857726668158628 Q gi|254780877|r 685 DVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDG-----DSVHDKVMGIVRSAFKPEFLNRLDEIILFE 759 (853) Q Consensus 685 ~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~-----~~~~~~~~~~l~~~f~peflnRid~iv~F~ 759 (853) T Consensus 611 DI~NILLQVMD~AtLTDN~GrKaDFRNVILIMTSNaGa~E~~~~~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~ 690 (774) T TIGR02639 611 DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAREMSKNPIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFN 690 (774) T ss_pred HHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECC T ss_conf 36667876633543405888576311368884037001023677644255541233488897315874201334644169 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE Q ss_conf 89989999999999999999998579899998899999997089822062157999998733499999970868897889 Q gi|254780877|r 760 KLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYIQNPLAERVLSQTISDGDSI 839 (853) Q Consensus 760 ~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i~~~la~~il~~~~~~g~~i 839 (853) T Consensus 691 ~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~~efGARpl~R~I~~~i~~~L~dEILFG~LKkGG~v 770 (774) T TIGR02639 691 DLSEEVAEKIVKKFLDELQKQLNEKNVELELTDDAIKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGEV 770 (774) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEE T ss_conf 98899999999999999997553065378764789999986367811055448999887412576544205700167268 Q ss_pred EEEE Q ss_conf 9999 Q gi|254780877|r 840 EVFV 843 (853) Q Consensus 840 ~i~~ 843 (853) T Consensus 771 ~~~~ 774 (774) T TIGR02639 771 KISL 774 (774) T ss_pred EEEC T ss_conf 8738

HHsearch alignment for GI: 254780877 and conserved domain: TIGR02639