HHsearch alignment for GI: 254780877 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.10 E-value=0.0088 Score=41.56 Aligned_cols=164 Identities=24% Similarity=0.336 Sum_probs=112.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCC---------CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHC
Q ss_conf 5333335789999999633677---------7866895288740777999999987348998444574378873135421
Q gi|254780877|r 177 LDPVIGRDDEMRRAIQVLSRRT---------KNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIA 247 (853)
Q Consensus 177 LDPVIGRe~EI~~~~~iL~r~~---------k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 247 (853)
T Consensus 27 l~Pvk~r~~~~a~lllv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva~~m~~~l~~l---Gy~r~G~~~~~trddlvG 103 (284)
T TIGR02880 27 LKPVKTRIREIAALLLVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVALRMAQILHRL---GYVRKGHLVSVTRDDLVG 103 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---CCCCCCCEEEEEHHHHHH
T ss_conf 41588999999999999999987422104883267751689872489999999999871---540036267853001311
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCC-CCCCCHHHHHHHHHC--CCCEEEEEEECHHHHHHHHH
Q ss_conf 745420245458999999860799769996362773026665-543358888765312--46604899744899999730
Q gi|254780877|r 248 GAKFRGEFEERLKSLLCEIRSEDGEIILFIDELHVLVGAGKT-DGAMDASNLLKPSLA--RGELHCIGATTLDEYRKYIE 324 (853)
Q Consensus 248 g~~~rg~~e~r~~~i~~~~~~~~~~~ilfide~h~~~gaG~~-~g~~Daan~LKP~La--rG~l~~IgaTT~~Eyrk~iE 324 (853)
T Consensus 104 --qy~GhtaPktke~lk~a---~GG-vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~~f~~ 177 (284)
T TIGR02880 104 --QYIGHTAPKTKEVLKRA---MGG-VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFE 177 (284)
T ss_pred --HHHCCCCCHHHHHHHHH---CCC-EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf --22125772268999874---287-366422033217764102237999999998723655378887170788888751
Q ss_pred CCHHHHHCCCE-EECCCCCHHHHHHH
Q ss_conf 01113202311-11157776789999
Q gi|254780877|r 325 KDPALARRFQS-LLVGEPTVTDTISI 349 (853)
Q Consensus 325 kD~Al~RRFq~-i~V~Eps~~~t~~i 349 (853)
T Consensus 178 snPG~~sr~a~h~~fPdy~~~~l~~i 203 (284)
T TIGR02880 178 SNPGLSSRVAHHVDFPDYSEEELLAI 203 (284)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 17862467764315888776789999