HHsearch alignment for GI: 254780877 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.21 E-value=3.7e-10 Score=101.51 Aligned_cols=206 Identities=28% Similarity=0.490 Sum_probs=145.6
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCHHH--H
Q ss_conf 76745948999999999987410123656651289872678616889999999872-------37765300224477--4
Q gi|254780877|r 567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL-------FDDENSMIRIDMSE--Y 637 (853)
Q Consensus 567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~l-------f~~~~~lir~dMse--y 637 (853)
T Consensus 64 F~EIiGQe~GI~AL-------KAALCGPN-PQHVIiY-GPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~RF 134 (532)
T TIGR02902 64 FDEIIGQEEGIKAL-------KAALCGPN-PQHVIIY-GPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTARF 134 (532)
T ss_pred CCCCCCCHHHHHHH-------HHHCCCCC-CCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 33256735568999-------98606868-9638987-886961789999999986508753789886689850510360
Q ss_pred CCCCCCCHHHCC--CCHHCCCCCCCCC---------CHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCE
Q ss_conf 034532013047--7112035667742---------11322156410220214414989999999984045788799977
Q gi|254780877|r 638 MEKHSVSRLIGS--PPGYVGYEEGGAL---------TEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRT 706 (853)
Q Consensus 638 ~e~~~vs~LiGa--ppGYvG~~~gg~L---------te~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~ 706 (853)
T Consensus 135 DERGIADPLIGSVHDPIYQGA---GplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDR--------K 203 (532)
T TIGR02902 135 DERGIADPLIGSVHDPIYQGA---GPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDR--------K 203 (532)
T ss_pred CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC--------C
T ss_conf 214666656776158533376---54578855758777632025865512124665824353141133022--------2
Q ss_pred EECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHH-----------------CCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 8303315595485126876403267999999999862-----------------88577266681586288998999999
Q gi|254780877|r 707 VDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSA-----------------FKPEFLNRLDEIILFEKLRKEDMAKI 769 (853)
Q Consensus 707 v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~-----------------f~peflnRid~iv~F~~l~~~~~~~i 769 (853)
T Consensus 204 VFLdSAYY-----------~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~E-IFFR~L~~EEi~~i 271 (532)
T TIGR02902 204 VFLDSAYY-----------SSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFRPLLKEEIKEI 271 (532)
T ss_pred CHHHCCCC-----------CCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEE-EEECCCCHHHHHHH
T ss_conf 00001235-----------8777865427899720678734012133369877678346505226-77168887899999
Q ss_pred HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 999999999999857989999889999999708982206215799999
Q gi|254780877|r 770 VRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ 817 (853)
Q Consensus 770 ~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~ 817 (853)
T Consensus 272 Ak~Aa---------eKIg~~l~~~Al~~I~~Ya---~nG-REAvN~~Q 306 (532)
T TIGR02902 272 AKNAA---------EKIGLNLEKEALDLIAKYA---SNG-REAVNLVQ 306 (532)
T ss_pred HHHHH---------HHCCCCCCHHHHHHHHHHH---CCC-CHHHHHHH
T ss_conf 87656---------5304654754799999874---054-06778999