HHsearch alignment for GI: 254780877 and conserved domain: TIGR02902

>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=99.21  E-value=3.7e-10  Score=101.51  Aligned_cols=206  Identities=28%  Similarity=0.490  Sum_probs=145.6

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCHHH--H
Q ss_conf             76745948999999999987410123656651289872678616889999999872-------37765300224477--4
Q gi|254780877|r  567 SKSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLL-------FDDENSMIRIDMSE--Y  637 (853)
Q Consensus       567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~l-------f~~~~~lir~dMse--y  637 (853)
T Consensus        64 F~EIiGQe~GI~AL-------KAALCGPN-PQHVIiY-GPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT~RF  134 (532)
T TIGR02902        64 FDEIIGQEEGIKAL-------KAALCGPN-PQHVIIY-GPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATTARF  134 (532)
T ss_pred             CCCCCCCHHHHHHH-------HHHCCCCC-CCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC
T ss_conf             33256735568999-------98606868-9638987-886961789999999986508753789886689850510360


Q ss_pred             CCCCCCCHHHCC--CCHHCCCCCCCCC---------CHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCE
Q ss_conf             034532013047--7112035667742---------11322156410220214414989999999984045788799977
Q gi|254780877|r  638 MEKHSVSRLIGS--PPGYVGYEEGGAL---------TEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRT  706 (853)
Q Consensus       638 ~e~~~vs~LiGa--ppGYvG~~~gg~L---------te~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~  706 (853)
T Consensus       135 DERGIADPLIGSVHDPIYQGA---GplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP~~MNKLLKVLEDR--------K  203 (532)
T TIGR02902       135 DERGIADPLIGSVHDPIYQGA---GPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHPVQMNKLLKVLEDR--------K  203 (532)
T ss_pred             CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC--------C
T ss_conf             214666656776158533376---54578855758777632025865512124665824353141133022--------2


Q ss_pred             EECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHH-----------------CCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf             8303315595485126876403267999999999862-----------------88577266681586288998999999
Q gi|254780877|r  707 VDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSA-----------------FKPEFLNRLDEIILFEKLRKEDMAKI  769 (853)
Q Consensus       707 v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~-----------------f~peflnRid~iv~F~~l~~~~~~~i  769 (853)
T Consensus       204 VFLdSAYY-----------~s~~pniP~hI~dIFqnGlPADFRLiGATTR~PeEIpPAlRSRC~E-IFFR~L~~EEi~~i  271 (532)
T TIGR02902       204 VFLDSAYY-----------SSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFRPLLKEEIKEI  271 (532)
T ss_pred             CHHHCCCC-----------CCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHCCCEE-EEECCCCHHHHHHH
T ss_conf             00001235-----------8777865427899720678734012133369877678346505226-77168887899999


Q ss_pred             HHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             999999999999857989999889999999708982206215799999
Q gi|254780877|r  770 VRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQ  817 (853)
Q Consensus       770 ~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~  817 (853)
T Consensus       272 Ak~Aa---------eKIg~~l~~~Al~~I~~Ya---~nG-REAvN~~Q  306 (532)
T TIGR02902       272 AKNAA---------EKIGLNLEKEALDLIAKYA---SNG-REAVNLVQ  306 (532)
T ss_pred             HHHHH---------HHCCCCCCHHHHHHHHHHH---CCC-CHHHHHHH
T ss_conf             87656---------5304654754799999874---054-06778999