HHsearch alignment for GI: 254780877 and conserved domain: TIGR02915

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=97.90  E-value=0.00083  Score=49.88  Aligned_cols=218  Identities=24%  Similarity=0.403  Sum_probs=155.7

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf             67459489999999999874101236566512898726786168899999998723776530022447740345320130
Q gi|254780877|r  568 KSVIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLI  647 (853)
Q Consensus       568 ~~v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~Li  647 (853)
T Consensus       142 ~Gli~~~~~m~kic~tIekv----A~sd--~-TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELF  214 (451)
T TIGR02915       142 EGLITSSPGMQKICRTIEKV----APSD--I-TVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELF  214 (451)
T ss_pred             CCEEECCCCHHHHHHHHHHH----CCCC--C-EEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             65220685067898886521----2000--0-130104667117899989842057897773444167457524667760


Q ss_pred             CCCCHHCCCCCCCCCCHHHHCCCC-------CEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCE---EECCCCEEEEC
Q ss_conf             477112035667742113221564-------10220214414989999999984045788799977---83033155954
Q gi|254780877|r  648 GSPPGYVGYEEGGALTEAVRRHPY-------QVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRT---VDFRNTLIIMT  717 (853)
Q Consensus       648 GappGYvG~~~gg~Lte~vr~~P~-------sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~---v~f~n~iii~T  717 (853)
T Consensus       215 -------GyEK-GAFTGA~k~T~GKIE~A~~GTLFLDEIGDLP~~LQAKLLRFLQErVIER~GGR~eIPVDVR---vvCA  283 (451)
T TIGR02915       215 -------GYEK-GAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVR---VVCA  283 (451)
T ss_pred             -------CCCC-HHHHHHHCCCCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE---EEEC
T ss_conf             -------3410-1242200347761675068830111122067668999998754666310588724561426---7503


Q ss_pred             CCHHHHHHHCCHHHHHHHHHHHH-HHHCCHHHHCCCCCE-EECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             85126876403267999999999-862885772666815-86288998--999999999999999999857989999889
Q gi|254780877|r  718 SNLGAEYLIEDGDSVHDKVMGIV-RSAFKPEFLNRLDEI-ILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQ  793 (853)
Q Consensus       718 sN~G~~~~~~~~~~~~~~~~~~l-~~~f~peflnRid~i-v~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~  793 (853)
T Consensus       284 Tnq--------------dL~~~i~eg~FREDLfYRl~Eisi~iPPLR~R~gDa~lLA~~Fl~rf~~~~k--~~~~~F~~D  347 (451)
T TIGR02915       284 TNQ--------------DLKKMIAEGTFREDLFYRLAEISITIPPLRDRDGDAVLLANAFLERFARELK--RKAKGFTDD  347 (451)
T ss_pred             CCH--------------HHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCHHHH
T ss_conf             224--------------6899985489720001346667862588998601899999999998878733--021660699


Q ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999997089822062157999998733
Q gi|254780877|r  794 VIDWLSCRGYDPSYGARPLKRVIQRYIQ  821 (853)
Q Consensus       794 ~~~~l~~~~~~~~~GaR~l~r~i~~~i~  821 (853)
T Consensus       348 A~~ale~--h~WPGNvRELEN~vKRAVI  373 (451)
T TIGR02915       348 ALRALEA--HKWPGNVRELENKVKRAVI  373 (451)
T ss_pred             HHHHHHC--CCCCCCHHHHHCHHHEEEE
T ss_conf             9999760--6998841544030021345