HHsearch alignment for GI: 254780877 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=97.50 E-value=0.00052 Score=51.54 Aligned_cols=230 Identities=21% Similarity=0.356 Sum_probs=138.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 8899975999899999999873778878777546761078864435699872---9853333357899999996336777
Q gi|254780877|r 123 GESLKKCGLKFSRLEESIKKLRKGRVADSVNAEQGFDALKKYCRDLTEEARN---GKLDPVIGRDDEMRRAIQVLSRRTK 199 (853)
Q Consensus 123 a~iL~~~gi~~~~l~e~i~~~~~~~~~~~~~~e~~~~~L~ky~~DLTe~Ar~---GkLDPVIGRe~EI~~~~~iL~r~~k 199 (853)
T Consensus 97 AYDFyqKP~d~d~L~liv~RAf~------------L~~Le~ENRrL~~-~~~~Gst~~~Gli~~~~~m~kic~tIekvA~ 163 (451)
T TIGR02915 97 AYDFYQKPIDPDVLKLIVDRAFR------------LYTLETENRRLQS-ALGGGSTALEGLITSSPGMQKICRTIEKVAP 163 (451)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH------------HHHHHHHHHHHHH-CCCCCCCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 51013578757899999999888------------8888887699874-0688741036522068506789888652120
Q ss_pred CC--EEEECCCCCCHHHHHHHHHHHH----------HCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 86--6895288740777999999987----------34899844457437887313542174542024545899999986
Q gi|254780877|r 200 NN--PVLIGDPGVGKTAIIEGLASRI----------INGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIR 267 (853)
Q Consensus 200 ~n--~~lvGe~GvGKtaive~la~~i----------~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~ 267 (853)
T Consensus 164 sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGAF----------TGA~k~T~GKIE 233 (451)
T TIGR02915 164 SDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGAF----------TGAVKQTLGKIE 233 (451)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHH----------HHHHCCCCCCEE
T ss_conf 0001301046671178999898420578977734441674575246677603410124----------220034776167
Q ss_pred HCCCCEEEEECCHH-----------------HH--CCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHH
Q ss_conf 07997699963627-----------------73--026665543358888765312466048997448999997300111
Q gi|254780877|r 268 SEDGEIILFIDELH-----------------VL--VGAGKTDGAMDASNLLKPSLARGELHCIGATTLDEYRKYIEKDPA 328 (853)
Q Consensus 268 ~~~~~~ilfide~h-----------------~~--~gaG~~~g~~Daan~LKP~LarG~l~~IgaTT~~Eyrk~iEkD~A 328 (853)
T Consensus 234 ~A~~G-TLFLDEIGDLP~~LQAKLLRFLQErVIER~G-GR~eIPV-------------DVRvvCATnq-dL~~~i~eg~F 297 (451)
T TIGR02915 234 YAHGG-TLFLDEIGDLPLNLQAKLLRFLQERVIERLG-GREEIPV-------------DVRVVCATNQ-DLKKMIAEGTF 297 (451)
T ss_pred EECCC-CCCCCCHHCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCC-------------CEEEEECCCH-HHHHHHHCCCC
T ss_conf 50688-3011112206766899999875466631058-8724561-------------4267503224-68999854897
Q ss_pred ---HHHCCCEEECCCCC----HHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf ---32023111115777----67899999997898654149---610158999998633320245767477899999999
Q gi|254780877|r 329 ---LARRFQSLLVGEPT----VTDTISILRGLKERYEQHHK---VRISDSALVSAAVLSNRYITDRFLPDKAIDLMDEAS 398 (853)
Q Consensus 329 ---l~RRFq~i~V~Eps----~~~t~~iL~gl~~~yE~~H~---V~i~d~al~~av~ls~rYi~~r~lPDKAIDllDeA~ 398 (853)
T Consensus 298 REDLfYRl~Eisi~iPPLR~R~gDa~lLA~~Fl~rf~~~~k~~~~~F~~DA~~a-------------------------- 351 (451)
T TIGR02915 298 REDLFYRLAEISITIPPLRDRDGDAVLLANAFLERFARELKRKAKGFTDDALRA-------------------------- 351 (451)
T ss_pred CCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------------------------
T ss_conf 200013466678625889986018999999999988787330216606999999--------------------------
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98754102221457887999997
Q gi|254780877|r 399 ARVRMQIDTKPEVLDELDRRIIC 421 (853)
Q Consensus 399 A~~~i~~~~~P~~l~~l~r~i~~ 421 (853)
T Consensus 352 ----le~h~WPGNvRELEN~vKR 370 (451)
T TIGR02915 352 ----LEAHKWPGNVRELENKVKR 370 (451)
T ss_pred ----HHCCCCCCCHHHHHCHHHE
T ss_conf ----7606998841544030021