HHsearch alignment for GI: 254780877 and conserved domain: TIGR02974

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=98.36  E-value=2.2e-05  Score=62.71  Aligned_cols=219  Identities=26%  Similarity=0.377  Sum_probs=164.3

Q ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHCCCCCCCHH
Q ss_conf             45948999999999987410123656651289872678616889999999872377---653002244774034532013
Q gi|254780877|r  570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD---ENSMIRIDMSEYMEKHSVSRL  646 (853)
Q Consensus       570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~---~~~lir~dMsey~e~~~vs~L  646 (853)
T Consensus         1 liG~S~aFL~vLeqvS~----lA~l~rPV---LiiGERGTGKELiA~RLHy-L--S~RW~~Plv~LNCAALse~LldSEL   70 (349)
T TIGR02974         1 LIGESNAFLEVLEQVSR----LAPLDRPV---LIIGERGTGKELIAARLHY-L--SKRWQQPLVKLNCAALSENLLDSEL   70 (349)
T ss_pred             CCCCCHHHHHHHHHHHH----CCCCCCCE---EEEECCCCCHHHHHHHHHH-H--HHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf             98872789999998751----04678866---8861467468999988533-2--4655488626610127825555665


Q ss_pred             HCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCC
Q ss_conf             047711203566774211322156-------4102202144149899999999840457887999778303315595485
Q gi|254780877|r  647 IGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSN  719 (853)
Q Consensus       647 iGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN  719 (853)
T Consensus        71 FG-------HE-aGAFTGA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN  142 (349)
T TIGR02974        71 FG-------HE-AGAFTGAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATN  142 (349)
T ss_pred             HH-------HC-CCCHHHHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCC
T ss_conf             31-------00-10013030468898544368873888871421676786612010130330178604773513676214


Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-CEEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             1268764032679999999998628857726668-1586288998--999999999999999999857989999889999
Q gi|254780877|r  720 LGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD-EIILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVID  796 (853)
Q Consensus       720 ~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid-~iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~  796 (853)
T Consensus       143 ~-------D------LP~lA~~G~FRaDLLDRLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL-~~~~F~GFt~~A~~  208 (349)
T TIGR02974       143 A-------D------LPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-GLPLFPGFTPQARE  208 (349)
T ss_pred             C-------C------HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHH
T ss_conf             1-------3------69898658984014554456550797888872327899999999999970-78655114389999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99970898220621579999987334
Q gi|254780877|r  797 WLSCRGYDPSYGARPLKRVIQRYIQN  822 (853)
Q Consensus       797 ~l~~~~~~~~~GaR~l~r~i~~~i~~  822 (853)
T Consensus       209 ~L~~--Y~WPGNvRELkNvvERsVyR  232 (349)
T TIGR02974       209 QLLE--YHWPGNVRELKNVVERSVYR  232 (349)
T ss_pred             HHHC--CCCCCCCHHHHHHHHHHHHH
T ss_conf             9970--68888521244467666530