HHsearch alignment for GI: 254780877 and conserved domain: TIGR02974
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=98.36 E-value=2.2e-05 Score=62.71 Aligned_cols=219 Identities=26% Similarity=0.377 Sum_probs=164.3
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC---CCCCCCCCHHHHCCCCCCCHH
Q ss_conf 45948999999999987410123656651289872678616889999999872377---653002244774034532013
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDD---ENSMIRIDMSEYMEKHSVSRL 646 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~---~~~lir~dMsey~e~~~vs~L 646 (853)
T Consensus 1 liG~S~aFL~vLeqvS~----lA~l~rPV---LiiGERGTGKELiA~RLHy-L--S~RW~~Plv~LNCAALse~LldSEL 70 (349)
T TIGR02974 1 LIGESNAFLEVLEQVSR----LAPLDRPV---LIIGERGTGKELIAARLHY-L--SKRWQQPLVKLNCAALSENLLDSEL 70 (349)
T ss_pred CCCCCHHHHHHHHHHHH----CCCCCCCE---EEEECCCCCHHHHHHHHHH-H--HHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 98872789999998751----04678866---8861467468999988533-2--4655488626610127825555665
Q ss_pred HCCCCHHCCCCCCCCCCHHHHCCC-------CCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCC
Q ss_conf 047711203566774211322156-------4102202144149899999999840457887999778303315595485
Q gi|254780877|r 647 IGSPPGYVGYEEGGALTEAVRRHP-------YQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSN 719 (853)
Q Consensus 647 iGappGYvG~~~gg~Lte~vr~~P-------~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN 719 (853)
T Consensus 71 FG-------HE-aGAFTGA~~rh~GRFERAdGGTLFLDElAtas~~VQEKLLRViEYG~fERVGG~~~l~vDVRlvaATN 142 (349)
T TIGR02974 71 FG-------HE-AGAFTGAKKRHEGRFERADGGTLFLDELATASLAVQEKLLRVIEYGEFERVGGSQTLKVDVRLVAATN 142 (349)
T ss_pred HH-------HC-CCCHHHHCCCCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCEEEECCEEEECCC
T ss_conf 31-------00-10013030468898544368873888871421676786612010130330178604773513676214
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCC-CEEECCCCCH--HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 1268764032679999999998628857726668-1586288998--999999999999999999857989999889999
Q gi|254780877|r 720 LGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLD-EIILFEKLRK--EDMAKIVRIQLGRVLSLIKERNISMDFDDQVID 796 (853)
Q Consensus 720 ~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid-~iv~F~~l~~--~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~ 796 (853)
T Consensus 143 ~-------D------LP~lA~~G~FRaDLLDRLAFDVi~LPPLR~R~~DI~lLAe~FA~~Ma~EL-~~~~F~GFt~~A~~ 208 (349)
T TIGR02974 143 A-------D------LPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL-GLPLFPGFTPQARE 208 (349)
T ss_pred C-------C------HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHH
T ss_conf 1-------3------69898658984014554456550797888872327899999999999970-78655114389999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99970898220621579999987334
Q gi|254780877|r 797 WLSCRGYDPSYGARPLKRVIQRYIQN 822 (853)
Q Consensus 797 ~l~~~~~~~~~GaR~l~r~i~~~i~~ 822 (853)
T Consensus 209 ~L~~--Y~WPGNvRELkNvvERsVyR 232 (349)
T TIGR02974 209 QLLE--YHWPGNVRELKNVVERSVYR 232 (349)
T ss_pred HHHC--CCCCCCCHHHHHHHHHHHHH
T ss_conf 9970--68888521244467666530