HHsearch alignment for GI: 254780877 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.85 E-value=3.9e-07 Score=76.94 Aligned_cols=160 Identities=16% Similarity=0.307 Sum_probs=81.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCCCCCHHHHCCCCCEEEEHHHH
Q ss_conf 98726786168899999998723776530022447740345320130477112035667742113221564102202144
Q gi|254780877|r 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGGALTEAVRRHPYQVVLFDEIE 680 (853)
Q Consensus 601 flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg~Lte~vr~~P~sVil~DEiE 680 (853)
T Consensus 41 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~~~~~-~~l-----------------~~l--~~~d~l~iDDi~ 100 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADP-EVL-----------------EGL--EQADLVCLDDVE 100 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH-HHH-----------------HHC--CCCCEEEEECHH
T ss_conf 999899999889999999999862699579952999877539-999-----------------727--448999996633
Q ss_pred HCC--HHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCC--CCEE
Q ss_conf 149--899999999840457887999778303315595485126876403267999999999862885772666--8158
Q gi|254780877|r 681 KAH--SDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRL--DEII 756 (853)
Q Consensus 681 Kah--~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRi--d~iv 756 (853)
T Consensus 101 ~i~~~~~~e~~lF~l~N~--~~--------~~~~~ilits~~~p~~----------------l~~~l~dL~SRl~~~~~~ 154 (226)
T TIGR03420 101 AIAGQPEWQEALFHLYNR--VR--------EAGGRLLIAGRAAPAQ----------------LPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred HHCCCHHHHHHHHHHHHH--HH--------HHCCEEEEECCCCHHH----------------CCCCHHHHHHHHHCCCEE
T ss_conf 343783789999999999--98--------6528289867888232----------------032017799999688568
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 62889989999999999999999998579899998899999997089822062157999998
Q gi|254780877|r 757 LFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQR 818 (853)
Q Consensus 757 ~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~ 818 (853)
T Consensus 155 ~I~~pdd~~~~~iL~k~~-------~~r~i--~i~~~vi~yl~~r~-~R~~--~~l~~~l~~ 204 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRA-------ARRGL--QLPDEVADYLLRHG-SRDM--GSLMALLDA 204 (226)
T ss_pred ECCCCCHHHHHHHHHHHH-------HHCCC--CCCHHHHHHHHHHC-CCCH--HHHHHHHHH
T ss_conf 527999999999999999-------98599--88999999999863-7989--999999999