HHsearch alignment for GI: 254780877 and conserved domain: TIGR03498
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.63 E-value=0.15 Score=31.50 Aligned_cols=148 Identities=20% Similarity=0.306 Sum_probs=69.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE---------------------EHHHHHCCCCCCCHHHHHH
Q ss_conf 6689528874077799999998734899844457437887---------------------3135421745420245458
Q gi|254780877|r 201 NPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMAL---------------------DMGALIAGAKFRGEFEERL 259 (853)
Q Consensus 201 n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~l---------------------d~~~l~ag~~~rg~~e~r~ 259 (853)
T Consensus 142 RigIfgg~GvGKt~Ll~~i~~~~~--------adv~V~aliGeRgrEv~efi~~~~~~~~l~~tvvv~atsd~p~~-~R~ 212 (418)
T TIGR03498 142 RLGIFAGSGVGKSTLLSMLARNTD--------ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPL-MRR 212 (418)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCC--------CCEEEEEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH-HHH
T ss_conf 641137899988899999987507--------98689988302689999999986531564426999944889878-888
Q ss_pred H------HHHHHHHHCCCCEEEEECCHHHHCCCCC-----------CCC-CCCH----HHHHHHH---H-CCCCEEEEEE
Q ss_conf 9------9999986079976999636277302666-----------554-3358----8887653---1-2466048997
Q gi|254780877|r 260 K------SLLCEIRSEDGEIILFIDELHVLVGAGK-----------TDG-AMDA----SNLLKPS---L-ARGELHCIGA 313 (853)
Q Consensus 260 ~------~i~~~~~~~~~~~ilfide~h~~~gaG~-----------~~g-~~Da----an~LKP~---L-arG~l~~Iga 313 (853)
T Consensus 213 ~a~~~a~aiAEyFrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~~ 292 (418)
T TIGR03498 213 QAAYTATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFT 292 (418)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf 88878778999998679838999557258899999999865899986778841777726878651368999856999999
Q ss_pred ECHHHHHHHHHCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 44899999730011132023111115777678999999978986541496101589999986333202457674778999
Q gi|254780877|r 314 TTLDEYRKYIEKDPALARRFQSLLVGEPTVTDTISILRGLKERYEQHHKVRISDSALVSAAVLSNRYITDRFLPDKAIDL 393 (853)
Q Consensus 314 TT~~Eyrk~iEkD~Al~RRFq~i~V~Eps~~~t~~iL~gl~~~yE~~H~V~i~d~al~~av~ls~rYi~~r~lPDKAIDl 393 (853)
T Consensus 293 v~~~-------~d----------D~~dpi~d~~~~i~Dg~i--------------------vLsr~la~~g~yP--AIdv 333 (418)
T TIGR03498 293 VLVD-------GD----------DHNEPVADAVRGILDGHI--------------------VLDRAIAERGRYP--AINV 333 (418)
T ss_pred EECC-------CC----------CCCCCCHHHHHHHCCEEE--------------------EECHHHHHCCCCC--CCCC
T ss_conf 9633-------88----------867761777767626389--------------------9848898679999--7088
Q ss_pred HHH
Q ss_conf 999
Q gi|254780877|r 394 MDE 396 (853)
Q Consensus 394 lDe 396 (853)
T Consensus 334 l~S 336 (418)
T TIGR03498 334 LAS 336 (418)
T ss_pred CCC
T ss_conf 526