HHsearch alignment for GI: 254780877 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.25 E-value=3e-11 Score=110.37 Aligned_cols=149 Identities=28% Similarity=0.388 Sum_probs=102.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCC
Q ss_conf 94899999999998741012365665128987267861688999999987237765300224477403453201304771
Q gi|254780877|r 572 GQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPP 651 (853)
Q Consensus 572 gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGapp 651 (853)
T Consensus 2 ~~~~~~~~l~~~~~~~---------~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CCHHHHHHHHHHHHCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH-
T ss_conf 8579999999998187---------998089989999886599999999712137982785477704677775760577-
Q ss_pred HHCCCCCCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHH
Q ss_conf 12035667742113221564102202144149899999999840457887999778303315595485126876403267
Q gi|254780877|r 652 GYVGYEEGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDS 731 (853)
Q Consensus 652 GYvG~~~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~ 731 (853)
T Consensus 72 ------~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~vI~~tn~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDL-----RIDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------HHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCC-----CCCCCCEEEEEEECCCCC--------
T ss_conf ------8898999999769986982016655999999999999871575-----406788899995289988--------
Q ss_pred HHHHHHHHHHHHCCHHHHCCCCCEEECC
Q ss_conf 9999999998628857726668158628
Q gi|254780877|r 732 VHDKVMGIVRSAFKPEFLNRLDEIILFE 759 (853)
Q Consensus 732 ~~~~~~~~l~~~f~peflnRid~iv~F~ 759 (853)
T Consensus 133 ----------~~~~~~~~~R~~~~i~~~ 150 (151)
T cd00009 133 ----------GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ----------CCHHHHHHCCCCEEEECC
T ss_conf ----------683776425598698638