HHsearch alignment for GI: 254780877 and conserved domain: cd00009

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.15  E-value=3.9e-10  Score=101.31  Aligned_cols=141  Identities=26%  Similarity=0.395  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHH
Q ss_conf             33578999999963367778668952887407779999999873489984445743788731354217454202454589
Q gi|254780877|r  181 IGRDDEMRRAIQVLSRRTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLK  260 (853)
Q Consensus       181 IGRe~EI~~~~~iL~r~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~  260 (853)
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (151)
T cd00009           1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-------RPGAPFLYLNASDLLEGLVVAELFGHFLV   73 (151)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHC-------CCCCCEEEEEHHHCCHHHHHHHHHHHHHH
T ss_conf             98579999999998187998089989999886599999999712-------13798278547770467777576057788


Q ss_pred             HHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHH----CCCCEEEEEEECHHHHHHHHHCCHHHHHCCCE
Q ss_conf             9999986079976999636277302666554335888876531----24660489974489999973001113202311
Q gi|254780877|r  261 SLLCEIRSEDGEIILFIDELHVLVGAGKTDGAMDASNLLKPSL----ARGELHCIGATTLDEYRKYIEKDPALARRFQS  335 (853)
Q Consensus       261 ~i~~~~~~~~~~~ilfide~h~~~gaG~~~g~~Daan~LKP~L----arG~l~~IgaTT~~Eyrk~iEkD~Al~RRFq~  335 (853)
T Consensus        74 ~~~~~~~~~~~~~vl~iDEi~~l~~-~~~~---~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~---~~~~~~~~~R~~~  145 (151)
T cd00009          74 RLLFELAEKAKPGVLFIDEIDSLSR-GAQN---ALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDI  145 (151)
T ss_pred             HHHHHHHHHCCCCEEEEECHHHCCH-HHHH---HHHHHHHHHCCCCCCCCCEEEEEEECCCCC---CCHHHHHHCCCCE
T ss_conf             9899999976998698201665599-9999---999999871575406788899995289988---6837764255986