HHsearch alignment for GI: 254780877 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.92 E-value=0.0012 Score=48.47 Aligned_cols=94 Identities=28% Similarity=0.446 Sum_probs=57.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHC--CCCCCCHHHCCCCHHCCCC---CCCCCCHHHHCCCCC
Q ss_conf 2898726786168899999998723776530022-447740--3453201304771120356---677421132215641
Q gi|254780877|r 599 GSFMFLGPTGVGKTELVKSLARLLFDDENSMIRI-DMSEYM--EKHSVSRLIGSPPGYVGYE---EGGALTEAVRRHPYQ 672 (853)
Q Consensus 599 ~~flf~GptGvGKTelak~la~~lf~~~~~lir~-dMsey~--e~~~vs~LiGappGYvG~~---~gg~Lte~vr~~P~s 672 (853)
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~~~-rivtiEd~~El~l~~~~~v~l~~-~~~~~~~~~~~~~~~li~~aLR~~p-d 102 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPHPNWVRLVT-RPGNVEGSGEVTMADLLRSALRMRP-D 102 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCC-CEEEECCCHHHCCCCCCEEEEEE-ECCCCCCCCEECHHHHHHHHCCCCC-C
T ss_conf 9899989999989999999996133456-45984153540477775688886-0464578650349999887366899-7
Q ss_pred EEEEHHHHHCCHHHHHHHHHHHHCCE
Q ss_conf 02202144149899999999840457
Q gi|254780877|r 673 VVLFDEIEKAHSDVHNILLQVLDDGR 698 (853)
Q Consensus 673 Vil~DEiEKah~~v~~~llqild~G~ 698 (853)
T Consensus 103 ~iivGEiR~--~Ea~~-~l~a~~tGh 125 (186)
T cd01130 103 RIIVGEVRG--GEALD-LLQAMNTGH 125 (186)
T ss_pred EEECCCCCC--HHHHH-HHHHHHCCC
T ss_conf 373175683--99999-999997489