HHsearch alignment for GI: 254780877 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.031 Score=37.15 Aligned_cols=33 Identities=39% Similarity=0.577 Sum_probs=24.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8987267861688999999987237765300224
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRID 633 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~d 633 (853)
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~ 62 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILID 62 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEEC
T ss_conf 9999999998399999999767758974-89999