HHsearch alignment for GI: 254780877 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.78 E-value=0.0053 Score=43.34 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.4
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 89872678616889999999
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLA 619 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la 619 (853)
T Consensus 23 ~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998999999888