HHsearch alignment for GI: 254780877 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.12 E-value=0.031 Score=37.17 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=29.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC---CHHHHCCCCCCCHHHC
Q ss_conf 898726786168899999998723776530022---4477403453201304
Q gi|254780877|r 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRI---DMSEYMEKHSVSRLIG 648 (853)
Q Consensus 600 ~flf~GptGvGKTelak~la~~lf~~~~~lir~---dMsey~e~~~vs~LiG 648 (853)
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~G~-i~i~g~~i~~~~--~~~~~~i~ 78 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLE--KALSSLIS 78 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCE-EEECCEEHHHHH--HHHHHHEE
T ss_conf 99999999875999999998617667886-999999889978--99997208