HHsearch alignment for GI: 254780877 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.22  E-value=1.9e-10  Score=103.84  Aligned_cols=162  Identities=20%  Similarity=0.357  Sum_probs=118.8

Q ss_pred             HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCC
Q ss_conf             45948999999999987410123656651289872678616889999999872377653002244774034532013047
Q gi|254780877|r  570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS  649 (853)
Q Consensus       570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGa  649 (853)
T Consensus         1 lIG~S~~m~~l~~~i~~~----a~~~~pV---LI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~   73 (168)
T pfam00158         1 LIGESPAMQEVLELAKRV----APTDATV---LITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGH   73 (168)
T ss_pred             CEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             973899999999999999----5889988---998999888899999999852435688312567899877999987587


Q ss_pred             CCH-HCCCC--CCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHH
Q ss_conf             711-20356--677421132215641022021441498999999998404578879997783033155954851268764
Q gi|254780877|r  650 PPG-YVGYE--EGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLI  726 (853)
Q Consensus       650 ppG-YvG~~--~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~  726 (853)
T Consensus        74 ~~g~f~ga~~~~~G~le----~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~------  143 (168)
T pfam00158        74 EKGAFTGAVSDRKGLFE----LADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNR------  143 (168)
T ss_pred             CCCCCCCCCCCCCCCEE----ECCCCEEECCCHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCC------
T ss_conf             66766898757899642----26998788024413999999999999857969977998458885499996598------


Q ss_pred             CCHHHHHHHHHHH-HHHHCCHHHHCCCCCEEE
Q ss_conf             0326799999999-986288577266681586
Q gi|254780877|r  727 EDGDSVHDKVMGI-VRSAFKPEFLNRLDEIIL  757 (853)
Q Consensus       727 ~~~~~~~~~~~~~-l~~~f~peflnRid~iv~  757 (853)
T Consensus       144 --------~L~~~v~~G~Fr~DLyyrLn-v~~  166 (168)
T pfam00158       144 --------DLEEAVAEGRFREDLYYRLN-VVP  166 (168)
T ss_pred             --------CHHHHHHCCCCHHHHHHHHC-EEE
T ss_conf             --------89999883996399888865-232