HHsearch alignment for GI: 254780877 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=99.22 E-value=1.9e-10 Score=103.84 Aligned_cols=162 Identities=20% Similarity=0.357 Sum_probs=118.8
Q ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCC
Q ss_conf 45948999999999987410123656651289872678616889999999872377653002244774034532013047
Q gi|254780877|r 570 VIGQSAAVESVSNALRRFRAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGS 649 (853)
Q Consensus 570 v~gq~~ai~~v~~~~~~~~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGa 649 (853)
T Consensus 1 lIG~S~~m~~l~~~i~~~----a~~~~pV---LI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~ 73 (168)
T pfam00158 1 LIGESPAMQEVLELAKRV----APTDATV---LITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGH 73 (168)
T ss_pred CEECCHHHHHHHHHHHHH----HCCCCCE---EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 973899999999999999----5889988---998999888899999999852435688312567899877999987587
Q ss_pred CCH-HCCCC--CCCCCCHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHH
Q ss_conf 711-20356--677421132215641022021441498999999998404578879997783033155954851268764
Q gi|254780877|r 650 PPG-YVGYE--EGGALTEAVRRHPYQVVLFDEIEKAHSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLI 726 (853)
Q Consensus 650 ppG-YvG~~--~gg~Lte~vr~~P~sVil~DEiEKah~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~ 726 (853)
T Consensus 74 ~~g~f~ga~~~~~G~le----~A~gGTL~LdeI~~L~~~~Q~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~------ 143 (168)
T pfam00158 74 EKGAFTGAVSDRKGLFE----LADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNR------ 143 (168)
T ss_pred CCCCCCCCCCCCCCCEE----ECCCCEEECCCHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCC------
T ss_conf 66766898757899642----26998788024413999999999999857969977998458885499996598------
Q ss_pred CCHHHHHHHHHHH-HHHHCCHHHHCCCCCEEE
Q ss_conf 0326799999999-986288577266681586
Q gi|254780877|r 727 EDGDSVHDKVMGI-VRSAFKPEFLNRLDEIIL 757 (853)
Q Consensus 727 ~~~~~~~~~~~~~-l~~~f~peflnRid~iv~ 757 (853)
T Consensus 144 --------~L~~~v~~G~Fr~DLyyrLn-v~~ 166 (168)
T pfam00158 144 --------DLEEAVAEGRFREDLYYRLN-VVP 166 (168)
T ss_pred --------CHHHHHHCCCCHHHHHHHHC-EEE
T ss_conf --------89999883996399888865-232